PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_000122-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

HD-ZIP

Protein Properties

Length: 284aa MW: 31841.2 Da PI: 8.4826

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_000122-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.1	1.5e-18	121	175	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F++n++++ +++e LA +l+L rqV vWFqNrRa+ k NNU_000122-RA 121 RKKLRLTKEQSRLLEESFRQNQTLNPKQKEALALQLKLRPRQVEVWFQNRRARTK 175 78889************************************************98 PP
2	HD-ZIP_I/II	117.9	5.8e-38	121	209	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+een+rL++eveeLr+ NNU_000122-RA 121 RKKLRLTKEQSRLLEESFRQNQTLNPKQKEALALQLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRWFGSLTEENRRLQREVEELRA 209 69*************************************************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-18	104	171	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.63E-19	112	178	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.329	117	177	IPR001356	Homeobox domain
SMART	SM00389	2.9E-16	119	181	IPR001356	Homeobox domain
CDD	cd00086	4.41E-16	120	178	No hit	No description
Pfam	PF00046	5.8E-16	121	175	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	152	175	IPR017970	Homeobox, conserved site
Pfam	PF02183	5.4E-10	177	210	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	2.0E-22	177	220	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
RWVRPRSNLY ILLLFPSIIY FTFLTFRPFH SNPFSSPIIA SQISIFFYAA PMEDLELTSR 60 LELTISVPGL ASSSSSTLPP SDGGSVTREL DINQIPSGTE EVGSAEEEEE SGLGGGEGPP 120 RKKLRLTKEQ SRLLEESFRQ NQTLNPKQKE ALALQLKLRP RQVEVWFQNR RARTKLKQTE 180 MECEYLKRWF GSLTEENRRL QREVEELRAM RVGPPTVLSP HSCEPLPAST LTMCPRCERV 240 TSSAFDKGPT IATTTNTTDP TATTLAFSKA APVLHQSRQP SAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	177	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260582.1	1e-167	PREDICTED: homeobox-leucine zipper protein HOX3-like
Swissprot	Q0JKX1	1e-83	HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
Swissprot	Q9XH38	1e-83	HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBL	A0A1U8AFC6	1e-165	A0A1U8AFC6_NELNU; homeobox-leucine zipper protein HOX3-like
STRING	XP_010260582.1	1e-166	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	1e-58	homeobox-leucine zipper protein 17