PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_000106-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 232aa MW: 26036.2 Da PI: 7.476 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++ +G g+W++ ++ g+ R++k+c++rw +yl NNU_000106-RA 13 KGAWSKQEDQKLIDYIRTHGEGCWRSLPQAAGLLRCGKSCRLRWINYL 60 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54 | 3.9e-17 | 66 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l NNU_000106-RA 66 RGNFAEDEEELIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111 8999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-23 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.166 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.81E-28 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.23E-10 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 27.378 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-26 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-16 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 66 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.97E-12 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MRKPCCDKQD TNKGAWSKQE DQKLIDYIRT HGEGCWRSLP QAAGLLRCGK SCRLRWINYL 60 RPDLKRGNFA EDEEELIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LRRKLINMGI 120 DPNNHRLNNH IHPSSPSKRV VSDSEISSGS KNQATQSCQP AKSHGDNDRV SDAASCLEDD 180 TCALPDLNLD LTMTTIPSSS SLAVVEERHQ IAEPDTGTEL ESAPSPTLLL FR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-28 | 10 | 115 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010259378.1 | 1e-172 | PREDICTED: transcription repressor MYB4-like | ||||
Swissprot | Q9SZP1 | 1e-78 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A1U8ABB2 | 1e-171 | A0A1U8ABB2_NELNU; transcription repressor MYB4-like | ||||
STRING | XP_010259378.1 | 1e-172 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 5e-81 | myb domain protein 4 |