PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_000026-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 377aa    MW: 41683.9 Da    PI: 7.7016
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_000026-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.81.2e-15303328126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +ktelC+ +++tGtC+yG++C+FaHg
  NNU_000026-RA 303 FKTELCNKWQQTGTCPYGENCQFAHG 328
                    79***********************8 PP
2zf-CCCH201.2e-06341365125
                    --S---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                    ykte Cr  +++ tC+yG rC+F H
  NNU_000026-RA 341 YKTEVCRMVLAGDTCPYGHRCHFRH 365
                    9**********55**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.3E-19297335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-11299334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.802302330IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-9302329IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-12303328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-8336371IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-11336367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821340368IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-5340367IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
PPTILPGFIL CFFRFSEKTK EATSPLFFTD SGGHSHRQMQ KDASYAADGV RDAAVSSPPR  60
SQDQQVLSTP QKQPNGSGLT SLYSIFSPET SPSNSVPLSP SGCSCDGDNN NNAIATENRL  120
YLAGLTLEFQ QLVNRYGICL NRLQEITNEV EALREENAKL RLTNKDLTMR LNLLTQASLQ  180
NLYVPSALPS LSIIDDFRRL YVGDNVRNSG ISGEISDSSP TSVIGSNQFE MSTDRVSLPK  240
SISIRSSGYL KMNHAAGSSG GSTRTNRLRV ASPVLSGTQR VFVPGEKKEE EALEFEVYNQ  300
GMFKTELCNK WQQTGTCPYG ENCQFAHGIS ELRPVIRHPR YKTEVCRMVL AGDTCPYGHR  360
CHFRHALTDH EKFMGPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-21303365466Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248453.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A1U7ZJG00.0A0A1U7ZJG0_NELNU; zinc finger CCCH domain-containing protein 14-like
STRINGXP_010248453.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.13e-72C3H family protein