PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf39490g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 179aa MW: 20481.2 Da PI: 7.6582 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.8 | 2.8e-11 | 43 | 68 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG C yG+ CkF H+ Niben101Scf39490g00006.1 43 YQPDICKDYKETGNCGYGNACKFLHD 68 67789********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 6.15E-9 | 40 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.202 | 42 | 70 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.1E-7 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.2E-9 | 43 | 68 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-12 | 43 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 2.7E-13 | 103 | 165 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 2.45E-13 | 119 | 162 | No hit | No description |
Pfam | PF13920 | 1.8E-8 | 119 | 161 | No hit | No description |
SMART | SM00184 | 0.0016 | 120 | 157 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 2.52E-5 | 120 | 161 | No hit | No description |
PROSITE profile | PS50089 | 10.217 | 120 | 158 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 135 | 144 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MNQYTDYKAG LRREHTISSE KACGAHGPLR ASAHIRVSTR FDYQPDICKD YKETGNCGYG 60 NACKFLHDRG DYKAGRQLEK EWEEAAKERK RKLAMGMLDE DDDDAEKSDE DDDDSLPFAC 120 FICRQPFVDP IMTKCKHYFC AHCALKHHAK NKKCFVCNQP TIGIFNTALE ISKRMAQGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 4e-49 | 27 | 175 | 181 | 317 | RING finger protein 113A |
5z58_M | 4e-49 | 27 | 175 | 181 | 317 | RING finger protein 113A |
6ff4_t | 4e-49 | 27 | 175 | 181 | 317 | RING finger protein 113A |
6ff7_t | 4e-49 | 27 | 175 | 181 | 317 | RING finger protein 113A |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009794839.1 | 1e-119 | PREDICTED: zinc finger CCCH domain-containing protein 1 | ||||
Refseq | XP_016511945.1 | 1e-119 | PREDICTED: zinc finger CCCH domain-containing protein 1-like | ||||
Swissprot | Q8GX84 | 1e-93 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | A0A1S4DEQ9 | 1e-118 | A0A1S4DEQ9_TOBAC; zinc finger CCCH domain-containing protein 1-like | ||||
TrEMBL | A0A1U7Y6H2 | 1e-118 | A0A1U7Y6H2_NICSY; zinc finger CCCH domain-containing protein 1 | ||||
STRING | XP_009794839.1 | 1e-119 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4403 | 23 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-85 | C3H family protein |