PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf39169g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ZF-HD | ||||||||
Protein Properties | Length: 251aa MW: 28536.2 Da PI: 8.072 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.3 | 7.5e-33 | 50 | 105 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 k +YkeClkNhA+ +GghavDGCgEfmp+ geegt +alkCaAC+CHRnFHR+e++ Niben101Scf39169g00001.1 50 KPKYKECLKNHAVGIGGHAVDGCGEFMPA-GEEGTLDALKCAACNCHRNFHRKETQI 105 679*************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 7.6E-31 | 52 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-23 | 52 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 3.3E-30 | 52 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.84 | 53 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-28 | 147 | 221 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.79E-17 | 153 | 220 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-24 | 159 | 215 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MEFETQEDQK EIRASPNYNS VLEISNSTDD PKMPSNSDEL ILDAPLQMRK PKYKECLKNH 60 AVGIGGHAVD GCGEFMPAGE EGTLDALKCA ACNCHRNFHR KETQIHHPPY YRTLPSGYFQ 120 HAMPPQRPLA LPSTSGGGGG GGYREDQEEM CNPNNSGTKK RFRTRFNQEQ KDKMLELAEK 180 LGWRIQRQDE GVVQQLCNEI GIKRHVFKVW MHNNKLTLGK KTLIQSTNPY LFAARKEAEK 240 EEDNTPKKNS F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-21 | 158 | 215 | 16 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009802158.1 | 1e-164 | PREDICTED: zinc-finger homeodomain protein 2-like isoform X2 | ||||
Refseq | XP_016462880.1 | 1e-164 | PREDICTED: zinc-finger homeodomain protein 2-like isoform X2 | ||||
Swissprot | A2Z259 | 3e-70 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
Swissprot | Q6YXH5 | 2e-70 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A1S3ZEH4 | 1e-163 | A0A1S3ZEH4_TOBAC; zinc-finger homeodomain protein 2-like isoform X2 | ||||
TrEMBL | A0A1U7YG84 | 1e-163 | A0A1U7YG84_NICSY; zinc-finger homeodomain protein 2-like isoform X2 | ||||
STRING | XP_009802157.1 | 1e-161 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 7e-66 | homeobox protein 22 |
Publications ? help Back to Top | |||
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