PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf38644g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 206aa MW: 23175.6 Da PI: 6.9338 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 236.7 | 1e-72 | 3 | 205 | 165 | 374 |
GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249 L+++A++l+vpfef++ v ++ledl++++++ + gEalaVn+v +lhr++ +++ ++L ++++ P++v++veqea+hn Niben101Scf38644g00002.1 3 LTELAHSLHVPFEFHP-VGEQLEDLKPHMFNRRIGEALAVNSVNRLHRVP------VNCIGNLLAMIRDQAPNIVTIVEQEASHN 80 89**************.7*******************************9......444557*********************** PP GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334 ++ Fl rfleal+yysa+fdsl+a++p++s++r+k+E+ ++++ei+n+v+cegaer+ rhe+lekWr+ +e GFk v+ls +a+ Niben101Scf38644g00002.1 81 GPYFLGRFLEALHYYSAIFDSLDATFPADSSQRAKLEQNIFAPEIMNIVSCEGAERVVRHERLEKWRRLMEGKGFKGVALSANAV 165 ************************************************************************************* PP GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +q klll ++ dgy++ +++g+l+lgW+dr+++++SaWr Niben101Scf38644g00002.1 166 TQSKLLLGLYSCDGYKLTDDNGCLLLGWQDRAILAASAWR 205 ***************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 33.225 | 1 | 185 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.6E-70 | 3 | 205 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
RCLTELAHSL HVPFEFHPVG EQLEDLKPHM FNRRIGEALA VNSVNRLHRV PVNCIGNLLA 60 MIRDQAPNIV TIVEQEASHN GPYFLGRFLE ALHYYSAIFD SLDATFPADS SQRAKLEQNI 120 FAPEIMNIVS CEGAERVVRH ERLEKWRRLM EGKGFKGVAL SANAVTQSKL LLGLYSCDGY 180 KLTDDNGCLL LGWQDRAILA ASAWRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-51 | 3 | 204 | 179 | 378 | Protein SCARECROW |
5b3h_A | 2e-51 | 3 | 204 | 178 | 377 | Protein SCARECROW |
5b3h_D | 2e-51 | 3 | 204 | 178 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009613034.1 | 1e-147 | PREDICTED: DELLA protein RGL1-like | ||||
Swissprot | G7L166 | 1e-131 | RAM1_MEDTR; GRAS family protein RAM1 | ||||
TrEMBL | A0A1S4C8Z1 | 1e-145 | A0A1S4C8Z1_TOBAC; DELLA protein RGL2-like | ||||
TrEMBL | A0A1U7YX55 | 1e-145 | A0A1U7YX55_NICSY; DELLA protein RGL2-like | ||||
STRING | XP_009613034.1 | 1e-147 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12566 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 3e-55 | RGA-like 1 |
Publications ? help Back to Top | |||
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