PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf37331g00004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 388aa MW: 42943.6 Da PI: 10.2214

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf37331g00004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.2	1.6e-16	36	120	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 +W++ v +L+ea++ ++ +r+klk+++We+v+k++ +++ ++++qCk+k+e+++kry+ + +++ + s++p+ Niben101Scf37331g00004.1 36 EWSEGAVSCLLEAYEAKWILRNRAKLKGQDWEDVAKHVsargNSTKSPKTQTQCKNKIESMKKRYRSESATAADA-----SSWPL 115 5***********************************54444445567788**************99984.....57* PP trihelix 82 fdqle 86 + +l+ Niben101Scf37331g00004.1 116 YPRLD 120 *9986 PP
2	trihelix	29.7	1.7e-09	124	179	30	86
trihelix 30 lWeevskkmrergf.erspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +We+v+k++++rg ++spk qCk+k+e+++kry+ + +++ + s++p++ +l+ Niben101Scf37331g00004.1 124 HWEDVAKHVSARGNsTKSPKtltQCKNKIESMKKRYRSESATAADA-----SSWPLYPRLD 179 7******666653566644449*************99984.....57**9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.2E-20	34	120	No hit	No description
Pfam	PF13837	8.7E-12	124	179	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MDQEISNKDD FFPRNKQQNS HVATGNNTSD RLKRDEWSEG AVSCLLEAYE AKWILRNRAK 60 LKGQDWEDVA KHVSARGNST KSPKTQTQCK NKIESMKKRY RSESATAADA SSWPLYPRLD 120 LLLHWEDVAK HVSARGNSTK SPKTLTQCKN KIESMKKRYR SESATAADAS SWPLYPRLDL 180 LLRGNNASAA STSLIPPPPP AVVEPPQPVT VLLPPPPAPV PPPPPPPPPM AVPIGNGGQN 240 SNGSNGVDRA AKEDTMDAKL SDNAAISDKN AMDTNSSTPA LYSDDNKSKS KNVKLRSMEK 300 KSKNKRKRAE GWEIGESIRL LAEVIVRSEQ ARMETMREIE RMRAEAEAKR GEMDLKRTEI 360 IANTQLEIAK LFASITKGVD PSLRIGRS

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MDQEISNKDD FFPRNKQQNS HVATGNNTSD RLKRDEWSEG AVSCLLEAYE AKWILRNRAK  60
LKGQDWEDVA KHVSARGNST KSPKTQTQCK NKIESMKKRY RSESATAADA SSWPLYPRLD  120
LLLHWEDVAK HVSARGNSTK SPKTLTQCKN KIESMKKRYR SESATAADAS SWPLYPRLDL  180
LLRGNNASAA STSLIPPPPP AVVEPPQPVT VLLPPPPAPV PPPPPPPPPM AVPIGNGGQN  240
SNGSNGVDRA AKEDTMDAKL SDNAAISDKN AMDTNSSTPA LYSDDNKSKS KNVKLRSMEK  300
KSKNKRKRAE GWEIGESIRL LAEVIVRSEQ ARMETMREIE RMRAEAEAKR GEMDLKRTEI  360
IANTQLEIAK LFASITKGVD PSLRIGRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009778178.1	0.0	PREDICTED: formin-binding protein 4
Refseq	XP_016450737.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A1S3YFD0	0.0	A0A1S3YFD0_TOBAC; trihelix transcription factor ASIL2-like
TrEMBL	A0A1U7WHQ6	0.0	A0A1U7WHQ6_NICSY; formin-binding protein 4
STRING	XP_009778178.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12251	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-53	sequence-specific DNA binding transcription factors