PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf36703g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 114aa MW: 12885.6 Da PI: 10.0599 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 33.3 | 9.8e-11 | 94 | 114 | 2 | 22 |
--SS-EEEEEEE--TT-SS-E CS WRKY 2 dDgynWrKYGqKevkgsefpr 22 +Dgy+WrKYGqK++ gs++pr Niben101Scf36703g00005.1 94 EDGYSWRKYGQKPILGSKYPR 114 7*******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-9 | 80 | 114 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 11.072 | 88 | 114 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-8 | 89 | 114 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.1E-7 | 94 | 114 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 114 aa Download sequence Send to blast |
MKQDVCQYLF VEILSSYDKA LSLLNGTALS VMSKGKQIIN SAPSSSTDKL ESPHLPVDSS 60 TKSSDRPSNS RKRKMISRRT EYVHARYGEE VPPEDGYSWR KYGQKPILGS KYPR |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 69 | 74 | SRKRKM |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009793244.1 | 2e-71 | PREDICTED: probable WRKY transcription factor 41 isoform X3 | ||||
TrEMBL | A0A1U7Y1Y3 | 4e-70 | A0A1U7Y1Y3_NICSY; probable WRKY transcription factor 41 isoform X3 | ||||
STRING | XP_009793242.1 | 2e-69 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12061 | 11 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G11070.1 | 2e-12 | WRKY family protein |