PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf34675g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 201aa    MW: 22238.7 Da    PI: 4.6307
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf34675g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.41.5e-1223661056
                       AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                              + +g+Wv eIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Niben101Scf34675g00005.1 23 RHWGKWVDEIRLPRK---RTRLWLGTFDTAEDAAMAYDREAYKLRGE 66
                              56**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.651373IPR001471AP2/ERF domain
PRINTSPR003674.7E-61728IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-252274IPR001471AP2/ERF domain
SMARTSM003801.8E-262379IPR001471AP2/ERF domain
CDDcd000184.76E-272375No hitNo description
PfamPF008473.9E-62366IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-172374IPR016177DNA-binding domain
PRINTSPR003674.7E-63955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MMLNKSGQAS LFNDETVQRS KARHWGKWVD EIRLPRKRTR LWLGTFDTAE DAAMAYDREA  60
YKLRGENANL NFPELFLSKH NIAISSSPTT SHESALPNLE MQLAPLPPSE CGNFEGEMGS  120
SEVIAIDGVQ GNVENCGALS QLSYFEAWLN AIPEGWGPGS PVWNDLDTNN NLILPHTNNF  180
GDVLQQTPHN SDLQGTTKPL G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-162173760ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in abiotic stress tolerance. Can directly regulate stress-related gene expression by binding to the DNA sequence 5'-[AG]CCGAC-3' (DRE element) of their promoter region. Involved in the regulation of stomatal closure movement under drought stress (PubMed:23625358). Acts as a positive regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress (PubMed:18550687, PubMed:22095047, PubMed:23625358). Induced by salt stress (PubMed:22095047). Induced by abscisic acid (ABA) and heat stress (PubMed:23625358). {ECO:0000269|PubMed:18550687, ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019225322.11e-89PREDICTED: ethylene-responsive transcription factor ERF054-like
SwissprotQ9SKT13e-41ERF53_ARATH; Ethylene-responsive transcription factor ERF053
TrEMBLA0A314KTP43e-88A0A314KTP4_NICAT; Ethylene-responsive transcription factor erf053
STRINGXP_009592286.11e-86(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA47182136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-43ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cheng MC,Hsieh EJ,Chen JH,Chen HY,Lin TP
    CORRECTION. Arabidopsis RGLG2, Functioning as a RING E3 Ligase, Interacts with AtERF53 and Negatively Regulates the Plant Drought Stress Response.
    Plant Physiol., 2016. 170(2): p. 1162-3
    [PMID:26826724]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]