PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf27304g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 184aa    MW: 21018.6 Da    PI: 6.2832
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf27304g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.33e-161561147
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                              k+i+n+   +vtfskRr g+ K A+EL  LCd+++ v++fs+tgk +
  Niben101Scf27304g00001.1 15 KKIKNEDDCYVTFSKRRSGLYKQASELVKLCDVDIGVVLFSPTGKPF 61
                              689*****************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-17766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.011767IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-22878IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-15929IPR002100Transcription factor, MADS-box
PfamPF003191.5E-201663IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-152944IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-154465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEGKKTRGRQ SIPMKKIKNE DDCYVTFSKR RSGLYKQASE LVKLCDVDIG VVLFSPTGKP  60
FSFFHPTSEA IIDRFLNPNM QLSESTRLVA AHARHNVNEL NNMKDLFDNI KEATSADSLL  120
LDNMKENSQR YRWESIEKFS ADEVKEYEAL LSAIVFNLNN RLKYLNNEAS SSSSSEAYSE  180
NTDN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595132.11e-109PREDICTED: agamous-like MADS-box protein AGL29
RefseqXP_016446656.11e-109PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A1S3Y3F21e-108A0A1S3Y3F2_TOBAC; agamous-like MADS-box protein AGL29
STRINGXP_009595132.11e-109(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-29AGAMOUS-like 61