PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf24238g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 244aa MW: 26939.9 Da PI: 8.7215 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36 | 1.2e-11 | 48 | 73 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p Niben101Scf24238g00010.1 48 GEPDCSYYIRTGLCRFGSTCRFNHPP 73 6899********************97 PP | |||||||
2 | zf-CCCH | 41.2 | 2.8e-13 | 93 | 118 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ Niben101Scf24238g00010.1 93 GQPECQYYLKTGTCKFGATCKFHHPK 118 5799********************96 PP | |||||||
3 | zf-CCCH | 39.7 | 8.4e-13 | 141 | 164 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +++rtG+Ck+G++CkF+H++ Niben101Scf24238g00010.1 141 AECAYYMRTGQCKFGSTCKFHHPQ 164 79********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.2E-5 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.483 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-8 | 48 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.29E-6 | 51 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-4 | 52 | 72 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-5 | 91 | 118 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.629 | 91 | 119 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.46E-7 | 92 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-10 | 93 | 118 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-5 | 97 | 117 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.9E-5 | 137 | 164 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 137 | 165 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.72E-7 | 138 | 165 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-10 | 140 | 164 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-5 | 143 | 163 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDFDAGISLS VTEGPSSLSP SLDQDTLWQM NLRSRESIES GHYPVREGEP DCSYYIRTGL 60 CRFGSTCRFN HPPNRKLAIA TARMKVEYPE RMGQPECQYY LKTGTCKFGA TCKFHHPKDK 120 AGIAGRVTLN VLGYPLRANE AECAYYMRTG QCKFGSTCKF HHPQPSNMMV SLRGSPAYPP 180 VPSATTPGQL SYPLSRGSFI PGARWQAPSS YTPLIMPQGV VSVPGFAYSV SFHMIPCICL 240 LSMA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009611380.1 | 1e-166 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X4 | ||||
Refseq | XP_016481312.1 | 1e-166 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X4 | ||||
Swissprot | Q9SWF9 | 1e-116 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A1S4AXF5 | 1e-165 | A0A1S4AXF5_TOBAC; zinc finger CCCH domain-containing protein ZFN-like isoform X4 | ||||
STRING | XP_009793876.1 | 1e-164 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5289 | 24 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-109 | zinc finger protein 1 |