PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf22883g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 342aa    MW: 38909.3 Da    PI: 4.3386
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf22883g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.3e-1953106356
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               k+++++ eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Niben101Scf22883g00002.1  53 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 106
                               56689************************************************9 PP
2HD-ZIP_I/II130.28.5e-4252144193
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk+++dalk++ e+L++++e
  Niben101Scf22883g00002.1  52 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFDALKHNYESLKHDNE 136
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreelke 93 
                               +L +e++e
  Niben101Scf22883g00002.1 137 ALLKEIRE 144
                               **999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-1943110IPR009057Homeodomain-like
PROSITE profilePS5007117.49148108IPR001356Homeobox domain
SMARTSM003896.1E-1851112IPR001356Homeobox domain
CDDcd000861.03E-1653109No hitNo description
PfamPF000464.1E-1653106IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.6E-2055115IPR009057Homeodomain-like
PRINTSPR000311.0E-57988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000311.0E-588104IPR000047Helix-turn-helix motif
PfamPF021833.0E-18108148IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MKRPCSSDSL GALMSMCPNT TDEQNHVYST RDFQSMLLDE EGCIEESGHI SEKKRRLSVE  60
QVKALEKNFE VENKLEPERK VKLAQELGLQ PRQVAVWFQN RRARWKTKQL ERDYGVLKAN  120
FDALKHNYES LKHDNEALLK EIRELKSKVY TGNGESKGVA VKEEAMESES DDNKLIEQSK  180
PNDNDNNNNN NFLQNFEEED DEEEEINFEN FNVAAASTNI FGDNFKDGSS DSDSSAILNE  240
DNSPNAAAIS SSGAFLISTN NGNGKGSSTS LNFCFQFTES SSKSNLGDGQ KGDNYYYQPQ  300
QYVKMEEHNF FNGEESCSTL FTDEQAPTLQ WYCPEDWNWK ES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100108RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00271DAPTransfer from AT2G22430Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777009.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
RefseqXP_016502437.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A1S4CMF70.0A0A1S4CMF7_TOBAC; homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A1U7WQP60.0A0A1U7WQP6_NICSY; homeobox-leucine zipper protein ATHB-6-like
STRINGXP_009777009.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27182453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.11e-65homeobox protein 6