PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf19439g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 262aa MW: 29817.7 Da PI: 8.4819

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf19439g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.3e-12	100	152	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ h +Er+RR+++ + + Lr+llP + ++K s ++ + Av+YI++Lq Niben101Scf19439g00001.1 100 KKVVHRNVERQRRQEMANLLTSLRSLLPLEF--IKGKRSASDHMQIAVNYIRHLQ 152 6788***********************65..*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.09E-14	97	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.27E-11	99	156	No hit	No description
PROSITE profile	PS50888	13.554	99	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-10	100	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-10	100	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-4	105	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MDNYLWEIFS SKQNIEQDLD HHHQLLQIPN FQLNGFFQQD QIPNQDLIGG PQEISSVNSN 60 NNYASVPTTM SSGNRSNLDN TNKGLIRRQE STISTSEDSK KVVHRNVERQ RRQEMANLLT 120 SLRSLLPLEF IKGKRSASDH MQIAVNYIRH LQKNIKELDN RRKQIKNSLD NLGAEKGSST 180 SYVTVNTCQD GMEILINVNS HKEGMFPLSK VLRWLLQEGL NVVSCVNSKQ DEWTLIRIQC 240 QVSDISGITA VGLQKKLTDL IS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019245688.1	1e-175	PREDICTED: transcription factor bHLH120-like
TrEMBL	A0A1J6IG60	1e-173	A0A1J6IG60_NICAT; Transcription factor bhlh120
STRING	XP_009757518.1	1e-160	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	1e-24	bHLH family protein