PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf18418g03002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 226aa MW: 25060.3 Da PI: 6.3603

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf18418g03002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.7	3.7e-12	163	208	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ +k + a++L Av+YIk+L+ Niben101Scf18418g03002.1 163 SIAERVRRTKISDRMRRLQDLVPNM----DKQTNTADMLDFAVDYIKELE 208 689*******************7....688*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.907	157	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.23E-16	160	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.77E-12	161	212	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.4E-15	162	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-12	163	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-9	163	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MQLTEYGAMR GVGSYRTGAN ATTDTSLSTP KRFKTQVGIS SGKPPASPGL MTPISEIGDK 60 VVEENSIGDE HKNDESCITD FPIPSWEDSH ILSDDFLKAE DIEIEPFSNV NTSNVQNSEG 120 LSRPPIPLSH HLSLPTSTLE KLLQDSTPLN VRAKRGCATH PRSIAERVRR TKISDRMRRL 180 QDLVPNMDKQ TNTADMLDFA VDYIKELEKQ VKILAEKCSK CTCTNK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019240992.1	1e-155	PREDICTED: transcription factor bHLH130-like isoform X1
TrEMBL	A0A1J6JPV1	1e-154	A0A1J6JPV1_NICAT; Transcription factor bhlh130
STRING	XP_009793126.1	1e-153	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4605	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	1e-40	bHLH family protein