PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf18157g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 310aa    MW: 34647.8 Da    PI: 7.9296
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf18157g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.82.3e-15232257126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +ktelC+ +++tG C+yG++C+FaHg
  Niben101Scf18157g00009.1 232 FKTELCNKWQETGACPYGNNCQFAHG 257
                               79***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.5E-19226263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-11228263IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-9231258IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.145231259IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-12232257IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-11265297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-8266299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.291269297IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-4269296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MQREISTTAG HGGAYNYNTS SSPPSLLSQP NAFNLTSLYS SILFPQHQNS QSLIDQHYHE  60
DLMDRHNRVL SQLLEAEKKT LALRQENINL KMANFNLNNQ LSLLLKASSS DYGPGLGLDS  120
VVDGIRRMHI GVGEEETSSD GHSWEDLVAD RHLSPTSVVD SGRSDGVDRV LLPKSISVRS  180
NGYLKTIHAG GGSRRQTSIK SVHTAQKVYV KGGGNKKEEQ PLELEVYNQG MFKTELCNKW  240
QETGACPYGN NCQFAHGIEE LRPILRHPRY KTEVCRMVLN GDPCPYGHRC HFRHTLTDQE  300
KLMTSLSTRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A6e-22232294466Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774204.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
RefseqXP_016470581.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like
TrEMBLA0A1S4A1Y80.0A0A1S4A1Y8_TOBAC; zinc finger CCCH domain-containing protein 15-like
TrEMBLA0A1U7WHT20.0A0A1U7WHT2_NICSY; zinc finger CCCH domain-containing protein 15
STRINGXP_009774204.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91402228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.17e-62C3H family protein