PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf18066g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 492aa    MW: 54487.1 Da    PI: 5.6449
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf18066g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.4e-14303348454
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               +h e+Er+RR+++N++f  Lr+++P+      +K++Ka+ L  AveYI++L
  Niben101Scf18066g00001.1 303 NHVEAERQRREKLNHRFYALRSVVPHV-----TKMDKASLLSDAVEYINEL 348
                               799***********************8.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-5331206IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.301299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-18300363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.31E-14302352No hitNo description
PfamPF000101.2E-11303348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-17303365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-17305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MDELMVSSSS SFSSFSISSL FSQTNQPLST LQQMLQHIVK NQTDSWSYAI FWQTSNDDDG  60
RLFLAWGDGH FHGTKVKKGE VDGANKASSL ERKNVIKGIQ ALICENVDVV EDGGDVTDIE  120
WFYVMSLAQS FSIGDGIPGK AFSTGSFVWL NGAQLQFCSC ERAKEAQVHG IETLVCIPTS  180
NGVLELGSSD LIKENWTLVQ QVKSLFSLDQ ENGLEKTISF ADIGLVSCLQ ENGQTLATNN  240
NHNKNNTSKK PRTEEISTAT TLFQDSDHSD SDCQVLVDKP EVEKKTPKKR GRKPGATRET  300
PLNHVEAERQ RREKLNHRFY ALRSVVPHVT KMDKASLLSD AVEYINELKT KVDELELQLN  360
KKSESKNKLK VESMDSTTLD NQSTTTTTTT ATSVDQIKPN SNSSSSFGPN NLTVEVEVRI  420
LGPDAMVRVQ SENVNYPSAR LMRALQDLEL HVHHASISSV NDLMLQDIVV KVPKCLATEN  480
GLKSALLRSL EQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-41302098195Transcription factor MYC3
4rqw_B4e-41302098195Transcription factor MYC3
4rs9_A4e-41302098195Transcription factor MYC3
4yz6_A4e-41302098195Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508165.10.0PREDICTED: transcription factor MYC3-like
TrEMBLA0A1S4D3Z60.0A0A1S4D3Z6_TOBAC; transcription factor MYC3-like
STRINGXP_009604694.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.17e-68bHLH family protein