PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf16888g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 335aa MW: 37301.4 Da PI: 6.3193 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.2 | 3.9e-10 | 58 | 107 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL + l ++ +K++Ka+iL +v+ +k+L Niben101Scf16888g00007.1 58 RKVQKADREKLRRDRLNEQFMELGKTLDPD----RPKNDKASILSDTVQMLKDL 107 5677889********************997....79****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 8.5E-12 | 57 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.28E-13 | 57 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.44 | 57 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.96E-7 | 58 | 112 | No hit | No description |
Pfam | PF00010 | 5.1E-8 | 58 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-7 | 63 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 335 aa Download sequence Send to blast |
MDQLNNGAMY QSNHLSNHCL AELNQLPSDV ALPPNGFHSD SSTKQQPEAE LKDSLAARKV 60 QKADREKLRR DRLNEQFMEL GKTLDPDRPK NDKASILSDT VQMLKDLTAQ VSRLKSEYAA 120 LTDESRELTQ EKNDLREEKA SLKSDIESLN AQYQQRVRTM YPWAGMDHSM VMHPTSYSYP 180 MPVPVPAGPV PMHPSMQPYP FFSNQNPAVV PNPCSSFVQY MTPNTLIEQQ SAQYMSPIIQ 240 PGSMTRQDSR NKSSDQGESR IEKSEDSNEV ATNLELKTPG SASDQDHSSG QRKSIKMSKK 300 DNSLTDGSSS SRCSSSHSVQ AISSNSVVRG TKTDD |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019265120.1 | 0.0 | PREDICTED: transcription factor bHLH121-like | ||||
Swissprot | Q9LT23 | 2e-92 | BH121_ARATH; Transcription factor bHLH121 | ||||
TrEMBL | A0A314L2T2 | 0.0 | A0A314L2T2_NICAT; Transcription factor bhlh121 | ||||
STRING | XP_009788103.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5456 | 24 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19860.1 | 2e-87 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|