PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf16707g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 766aa MW: 84624.6 Da PI: 8.1857

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf16707g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4e-07	347	367	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg Niben101Scf16707g00002.1 347 PCPEFRK-GACQRGDMCEYAHG 367 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	1.09E-14	76	206	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.8E-16	126	206	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.273	126	201	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	3.5E-9	126	195	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	7.52E-13	126	201	No hit	No description
SMART	SM00248	0.12	126	156	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.968	161	196	IPR002110	Ankyrin repeat
SMART	SM00248	1.4E-4	161	193	IPR002110	Ankyrin repeat
SMART	SM00356	2.0E-5	342	368	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.568	347	369	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-4	347	367	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-4	375	405	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	39	377	400	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 766 aa Download sequence Send to blast
MKKKLPVKIK FFPHFQSLSV AAAAVAVVGG DLYKDKSFSL YILLAEYLRM KFAIERSGMW 60 ILHWITTMNM NNLTVETEDS FVSLLELAAK NDIVAFKKWI EHDLSGIHEV GLWYGRLKGS 120 RQMVLEHRTP LLVAATYGSI DVLKLILSLP EVDVNQSCGR DKSTALHCAA SGGSPNAVDA 180 VKMLLEAGAD PNSEDANGHR PQDVIVVSPK FHSTESSLES LLKSDTTGKC SLRLSTATSN 240 SNSPPLSPSP GNRSLSSTSD STSSPKSAKS NDLPVSSASE KKEYPIDPSL PDIKNSIYST 300 DEFRMFSFKI RRCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPE FRKGACQRGD 360 MCEYAHGVFE CWLHPAQYRT RLCKDGTKCN RRVCFFAHTQ EELRPLYVST GSAVPSPRSN 420 TSAANAKDFA AAMGLIPGSP SSVRVMSPLP FTPLMSPSAK GVSNMSWPQP NVPALHLPGS 480 NFHSSHLRLS LHARDIRAED LNFDMQEHQQ FINEFSCLSQ SGVNANPLNR LAHPKTLTPS 540 NLEDLFSAEN SSPRYSDQAL AQAVFSPTHK SAVLNQFQQQ QQSMLSPINT KFSPINVDNP 600 LLQASFGVQT PGRMSPRGME PISPMSSRVC ALSQREKHQQ FRSLSSRDLG SNASAVIGSP 660 VDTWSKWGSS NGNADWAVNT EEFGRLKRSS SFELANNGEE PDLSWVQSLV KESPQKLKDK 720 ATSRVLGLAG STADLTEDFT LNSQIEQLDQ LNAWMEQMKL DKLMAQ

Sequence ? help Back to Top

Protein Sequence Length: 766 aa Download sequence Send to blast

MKKKLPVKIK FFPHFQSLSV AAAAVAVVGG DLYKDKSFSL YILLAEYLRM KFAIERSGMW  60
ILHWITTMNM NNLTVETEDS FVSLLELAAK NDIVAFKKWI EHDLSGIHEV GLWYGRLKGS  120
RQMVLEHRTP LLVAATYGSI DVLKLILSLP EVDVNQSCGR DKSTALHCAA SGGSPNAVDA  180
VKMLLEAGAD PNSEDANGHR PQDVIVVSPK FHSTESSLES LLKSDTTGKC SLRLSTATSN  240
SNSPPLSPSP GNRSLSSTSD STSSPKSAKS NDLPVSSASE KKEYPIDPSL PDIKNSIYST  300
DEFRMFSFKI RRCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPE FRKGACQRGD  360
MCEYAHGVFE CWLHPAQYRT RLCKDGTKCN RRVCFFAHTQ EELRPLYVST GSAVPSPRSN  420
TSAANAKDFA AAMGLIPGSP SSVRVMSPLP FTPLMSPSAK GVSNMSWPQP NVPALHLPGS  480
NFHSSHLRLS LHARDIRAED LNFDMQEHQQ FINEFSCLSQ SGVNANPLNR LAHPKTLTPS  540
NLEDLFSAEN SSPRYSDQAL AQAVFSPTHK SAVLNQFQQQ QQSMLSPINT KFSPINVDNP  600
LLQASFGVQT PGRMSPRGME PISPMSSRVC ALSQREKHQQ FRSLSSRDLG SNASAVIGSP  660
VDTWSKWGSS NGNADWAVNT EEFGRLKRSS SFELANNGEE PDLSWVQSLV KESPQKLKDK  720
ATSRVLGLAG STADLTEDFT LNSQIEQLDQ LNAWMEQMKL DKLMAQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009618285.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30 isoform X1
Refseq	XP_009618286.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30 isoform X1
Refseq	XP_016464875.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_016464876.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_016464877.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_018631218.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30 isoform X1
Refseq	XP_018631219.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30 isoform X1
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A1S3ZKG8	0.0	A0A1S3ZKG8_TOBAC; zinc finger CCCH domain-containing protein 30-like
STRING	XP_009618285.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA883	24	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]