PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf16205g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 267aa    MW: 29900.7 Da    PI: 8.6723
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf16205g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.6e-074363526
                              --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                               C++f++ G Ck Gd C +aHg
  Niben101Scf16205g00002.1 43 ACPDFRK-GLCKKGDACEYAHG 63
                              7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.3E-53864IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0843965IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-54363IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-44365IPR000571Zinc finger, CCCH-type
SMARTSM00356167396IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.1557397IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MYEFKVRKCA RGRSHDWTEC PYAHPGEKAR RRDPQKYHYS GTACPDFRKG LCKKGDACEY  60
AHGVFECWLH PARYRTQPCK DGTHCRRRVC FFAHTPEQLR VLPQNSPRSH AAESCDSFEG  120
SPSRLGFDSF SSSPPFDSPP MSPSGSLCLN SVNGLAESMR NMQIGMVRGM SSPTWGLQMG  180
TRGFGSPRST STLRPGFMSL PTTPTRTPTR SGLAVFDQWE KTCEEEPAME RVESGRDLRA  240
RIYAKLSMEN SLDSGAPDVG WVSELVK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235505.11e-177PREDICTED: zinc finger CCCH domain-containing protein 20
SwissprotO821995e-98C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A1J6K8P71e-176A0A1J6K8P7_NICAT; Zinc finger ccch domain-containing protein 49
STRINGXP_009784195.11e-175(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-93C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]