PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf15720g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HRT-like
Protein Properties Length: 791aa    MW: 88103.4 Da    PI: 10.3067
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf15720g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like551.4e-17272302131
                  HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                               iCGv+l++GsvC+r+P+ g+KRC+eHKGm++
  Niben101Scf15720g00002.1 272 ICGVALGHGSVCMRPPITGNKRCAEHKGMKV 302
                               8****************************97 PP
2HRT-like443.7e-14335364130
                  HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                               iCG+il+ G +C r+P + +KRC eHKG+R
  Niben101Scf15720g00002.1 335 ICGFILDGGAPCARKPFQRNKRCLEHKGRR 364
                               8****************************9 PP
3HRT-like62.84.9e-20421451131
                  HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                               iCGv+l dGs+C+rqPv gRKRC+eHKGmR+
  Niben101Scf15720g00002.1 421 ICGVRLTDGSFCTRQPVAGRKRCKEHKGMRV 451
                               8*****************************7 PP
4HRT-like551.4e-17583613131
                  HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                               iCGv+l++GsvC+r+P+ g+KRC+eHKGm++
  Niben101Scf15720g00002.1 583 ICGVALGHGSVCMRPPITGNKRCAEHKGMKV 613
                               8****************************97 PP
5HRT-like443.7e-14646675130
                  HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                               iCG+il+ G +C r+P + +KRC eHKG+R
  Niben101Scf15720g00002.1 646 ICGFILDGGAPCARKPFQRNKRCLEHKGRR 675
                               8****************************9 PP
6HRT-like62.84.9e-20732762131
                  HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                               iCGv+l dGs+C+rqPv gRKRC+eHKGmR+
  Niben101Scf15720g00002.1 732 ICGVRLTDGSFCTRQPVAGRKRCKEHKGMRV 762
                               8*****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd007190.0082188116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MEATHRSVTV RLNREDCKRT KHDSAFSDWK ILIGPNDWTD YLLGKEGAEK YRTQNLPNCT  60
SCSGIYELGI AVSRRQAGRE ASRLDPDYIV PVYVGKSDNV RTRIQRYGRE GAHLENGCSS  120
CALHDQVNVS ASKRAGLFTE AFSRGFSIVY RWAPMNDNKD AEKTEAQLLD RFDYAWNKGS  180
NGVRRHNDVL RKLDGVSRAT RLPAFVRKLQ LSLEKQKGVR IKPCKPLLLE NGSDFHYSFK  240
STYFLPQIFK FGRSKPRIVS LSSGVNGDPN TICGVALGHG SVCMRPPITG NKRCAEHKGM  300
KVNGVNSKLI AEGNSSVINE STRPCASRGE QNAPICGFIL DGGAPCARKP FQRNKRCLEH  360
KGRRNRGCVS QPVTDKNGQS ILEYRTYSSN DCHQMLSRRA DTQHLQDFSI CPLINHNNNA  420
ICGVRLTDGS FCTRQPVAGR KRCKEHKGMR VKEPISKQLG AEIPSMNDNK DAEKTEAQLL  480
DRFDYAWNKG SNGVRRHNDV LRKLDGVSRA TRLPAFVRKL QLSLEKQKGV RIKPCKPLLL  540
ENGSDFHYSF KSTYFLPQIF KFGRSKPRIV SLSSGVNGDP NTICGVALGH GSVCMRPPIT  600
GNKRCAEHKG MKVNGVNSKL IAEGNSSVIN ESTRPCASRG EQNAPICGFI LDGGAPCARK  660
PFQRNKRCLE HKGRRNRGCV SQPVTDKNGQ SILEYRTYSS NDCHQMLSRR ADTQHLQDFS  720
ICPLINHNNN AICGVRLTDG SFCTRQPVAG RKRCKEHKGM RVKEPISKQL GAEIPSVFAG  780
PAAKSSSEKK H
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019223591.10.0PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBLA0A314KXS50.0A0A314KXS5_NICAT; Protein effector of transcription 2
STRINGXP_009779864.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77412330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.15e-88effector of transcription2