PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf15120g01015.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 567aa    MW: 62296.2 Da    PI: 4.6086
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf15120g01015.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS407.71.1e-1242195631353
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               lv++L++cAea+++++++la+alL+++  la +++ +m+++a+yf+eALa++++r    ly    ps+ ++   ++ l++   f+
  Niben101Scf15120g01015.1 219 LVHTLMACAEAIQQEKMKLAEALLKQIGFLAVSQAGAMRKVATYFAEALARKVYR----LY----PSNPNDPAFTDLLQM--HFY 293
                               689****************************************************....44....444443334555444..5** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
                               e++P+lkf+h+taNqaIlea++++++vH+iDf+++qG+QWpaLlqaLa Rp+g+p++R+Tg+g+p++++++ l+++g++La++Ae
  Niben101Scf15120g01015.1 294 ETCPYLKFAHFTANQAILEAFANKNKVHVIDFSMKQGMQWPALLQALALRPGGAPTFRLTGIGPPSQDNTDHLQQVGWKLAQLAE 378
                               ************************************************************************************* PP

                      GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                               +++v+fef+ +va++l+dl+ +++++++gE++aVn++++lh ll++++ +e+    vL++vk+l+P+++++veqea+hn++ F++
  Niben101Scf15120g01015.1 379 SINVEFEFRGFVANTLADLDASMFDIREGETVAVNSMFELHPLLARPGGIEK----VLSFVKDLKPEIFTIVEQEANHNGPFFMD 459
                               ***************************************************9....***************************** PP

                      GRAS 256 rflealeyysalfdsleak.....lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                               rf+e+l+yys+lfdsle       l++ s++++ +++++lgr+i+n+v+ceg +r+erhetl++Wr r+++aGF+pv+l+++a k
  Niben101Scf15120g01015.1 460 RFTESLHYYSTLFDSLEGCgsggeLGPVSDQDKLMSEVYLGRQICNLVSCEGIDRVERHETLAQWRTRFNSAGFEPVHLGSNAFK 544
                               ****************8766677799999******************************************************** PP

                      GRAS 336 qaklllrkvk.sdgyrvee 353
                               qa++ll+ ++ + gy++++
  Niben101Scf15120g01015.1 545 QASMLLALFAgGGGYEWKK 563
                               **********8899*9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576129No hitNo description
PfamPF120412.0E-3444110IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.3E-3344117No hitNo description
PROSITE profilePS5098566.057193563IPR005202Transcription factor GRAS
PfamPF035143.7E-122219563IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MKREQTMPYE QLEDSFSGGC SSAAGGGGCS GKGKMWEEDG GVDDELLAVL GYKVKASDMA  60
EVAQKLEQLE EVMGSVEQDN LSFLASETVH YNPSDLSSWL ESMISELNPQ DPFSNSSSSF  120
PTNQVYEDSS SFDSDLTAIP GKAVFPQIEN PAHEPQVQQP QSKRFKPTIA TELSSPSSSS  180
ISVGGGMWGS FQSESISTRP AESTRPVVLV DSQDNGVRLV HTLMACAEAI QQEKMKLAEA  240
LLKQIGFLAV SQAGAMRKVA TYFAEALARK VYRLYPSNPN DPAFTDLLQM HFYETCPYLK  300
FAHFTANQAI LEAFANKNKV HVIDFSMKQG MQWPALLQAL ALRPGGAPTF RLTGIGPPSQ  360
DNTDHLQQVG WKLAQLAESI NVEFEFRGFV ANTLADLDAS MFDIREGETV AVNSMFELHP  420
LLARPGGIEK VLSFVKDLKP EIFTIVEQEA NHNGPFFMDR FTESLHYYST LFDSLEGCGS  480
GGELGPVSDQ DKLMSEVYLG RQICNLVSCE GIDRVERHET LAQWRTRFNS AGFEPVHLGS  540
NAFKQASMLL ALFAGGGGYE WKKIMVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5522655726353Protein SCARECROW
5b3h_A2e-5522655725352Protein SCARECROW
5b3h_D2e-5522655725352Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789076.10.0PREDICTED: DELLA protein GAI1-like
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A1U7XHE40.0A0A1U7XHE4_NICSY; DELLA protein GAI1-like
STRINGXP_009789076.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21262462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein