PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf15049g00021.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 353aa MW: 39184.2 Da PI: 9.9571

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf15049g00021.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.2	5.8e-15	37	120	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspk...qCkekwenlnkrykkikegekkrtsessstcpyf 82 W++ +L+ea++ ++ +r+klk+++We+v+k++++rg ++spk qCk+k+e+++kry+ + +++ + s++p++ Niben101Scf15049g00021.1 37 WSEGAGSCLLEAYEAKWILRNRAKLKGQDWEDVAKHVSARGNsTKSPKtltQCKNKIESMKKRYRSESATAADA-----SSWPLY 116 9999999****************************666653566654449*************99984.....57** PP trihelix 83 dqle 86 +l+ Niben101Scf15049g00021.1 117 PRLD 120 9996 PP
2	trihelix	29.9	1.5e-09	124	179	30	86
trihelix 30 lWeevskkmrergf.erspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +We+v+k++++rg ++spk qCk+k+e+++kry+ + +++ + s++p++ +l+ Niben101Scf15049g00021.1 124 HWEDVAKHVSARGNsTKSPKtltQCKNKIESMKKRYRSESATAADA-----SSWPLYPRLD 179 7******666653566644449*************99984.....57**9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.9E-18	34	120	No hit	No description
Pfam	PF13837	7.5E-12	124	179	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MDQEISNKDD FFPRNKQQNY HVAPGNNTSD RLKRDEWSEG AGSCLLEAYE AKWILRNRAK 60 LKGQDWEDVA KHVSARGNST KSPKTLTQCK NKIESMKKRY RSESATAADA SSWPLYPRLD 120 LLLHWEDVAK HVSARGNSTK SPKTLTQCKN KIESMKKRYR SESATAADAS SWPLYPRLDL 180 LLRGNNASAA STSVIPPPPL AVVETPQPAT VPPPPPIPVP PPPPPPPPMD VPIGNGGQNS 240 NGSNGVDRAA KEDTMDTKLS DNAAISDKNA MDTNSSTPAL YSDDKSKSKN VKLRSMEKKS 300 KNKRKRAEGW EIGESIRLLA EVVVRSEQAR METMREIERM RAEAEAKRGE MEP

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MDQEISNKDD FFPRNKQQNY HVAPGNNTSD RLKRDEWSEG AGSCLLEAYE AKWILRNRAK  60
LKGQDWEDVA KHVSARGNST KSPKTLTQCK NKIESMKKRY RSESATAADA SSWPLYPRLD  120
LLLHWEDVAK HVSARGNSTK SPKTLTQCKN KIESMKKRYR SESATAADAS SWPLYPRLDL  180
LLRGNNASAA STSVIPPPPL AVVETPQPAT VPPPPPIPVP PPPPPPPPMD VPIGNGGQNS  240
NGSNGVDRAA KEDTMDTKLS DNAAISDKNA MDTNSSTPAL YSDDKSKSKN VKLRSMEKKS  300
KNKRKRAEGW EIGESIRLLA EVVVRSEQAR METMREIERM RAEAEAKRGE MEP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009593617.1	1e-158	PREDICTED: trihelix transcription factor ASIL2
Refseq	XP_016485756.1	1e-158	PREDICTED: trihelix transcription factor ASIL2-like
Refseq	XP_018624331.1	1e-158	PREDICTED: trihelix transcription factor ASIL2
TrEMBL	A0A1S4BA19	1e-157	A0A1S4BA19_TOBAC; trihelix transcription factor ASIL2-like
STRING	XP_009593617.1	1e-158	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12251	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	3e-51	sequence-specific DNA binding transcription factors