PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf14805g02006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 306aa    MW: 35697.5 Da    PI: 4.5328
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf14805g02006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.6e-1886139356
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               k++++ ++q++ Le+ Fe ++++  e++ +LAk++gL+ rqV++WFqNrRa++k
  Niben101Scf14805g02006.1  86 KKRRLLPKQVQFLEKSFEVENKLEPERKIQLAKETGLQPRQVSIWFQNRRARYK 139
                               45577899*********************************************9 PP
2HD-ZIP_I/II119.61.7e-3885176192
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               ekkrrl  +qv++LE+sFe e+kLeperK +la+e glqprqv +WFqnrRAR+k+kqlEkdy++Lk+++d+lk+e + L ke+e
  Niben101Scf14805g02006.1  85 EKKRRLLPKQVQFLEKSFEVENKLEPERKIQLAKETGLQPRQVSIWFQNRRARYKSKQLEKDYDVLKASFDKLKDEYDILFKENE 169
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreelk 92 
                               +Lr+e++
  Niben101Scf14805g02006.1 170 NLRNEVH 176
                               ***9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.74681141IPR001356Homeobox domain
SMARTSM003895.9E-1884145IPR001356Homeobox domain
SuperFamilySSF466897.27E-1885151IPR009057Homeodomain-like
CDDcd000861.62E-1686142No hitNo description
PfamPF000463.7E-1586139IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.2E-1989148IPR009057Homeodomain-like
PRINTSPR000314.1E-5112121IPR000047Helix-turn-helix motif
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
PRINTSPR000314.1E-5121137IPR000047Helix-turn-helix motif
PfamPF021838.9E-17141182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEVARDYEGS NMNSFILPNE SFPLPSEVLD SLWISNSSPT SHGSVSMVNF DDTRGKKSKE  60
RSFFPSVDRE ENSNEDYEES FHQPEKKRRL LPKQVQFLEK SFEVENKLEP ERKIQLAKET  120
GLQPRQVSIW FQNRRARYKS KQLEKDYDVL KASFDKLKDE YDILFKENEN LRNEVHLLKE  180
KLFDREQNSE EKEPISPLNT EAHNPTRNMQ NLTMIVCKQE DASLAKSDIL DSDSPCYADG  240
NYTSFLEPAD SSHVFETETS DFSQEDDSLS RTLLSSLCFP KLEDDLPVNS CHLSFQIEDQ  300
SWFCHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141RRARYKSKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019223461.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBLA0A1J6ILW20.0A0A1J6ILW2_NICAT; Homeobox-leucine zipper protein hat5
STRINGXP_009801495.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-44homeobox 1