PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf14311g01009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | TCP | ||||||||
Protein Properties | Length: 183aa MW: 19461.1 Da PI: 7.2145 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 90.8 | 3e-28 | 31 | 93 | 11 | 73 |
TCP 11 ihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 hTkv+g +RRvR++++ca r+F+L++eLG+ +d++tieWLl+ +pai+++tgt++ ++ + Niben101Scf14311g01009.1 31 KHTKVNGIGRRVRMPVLCAVRVFQLTKELGHRTDGETIEWLLRHEEPAIIAATGTGTVPSGYV 93 6******************************************************77776333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 20.513 | 26 | 82 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 5.5E-23 | 31 | 93 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MGSDIVLHHN FTPHPTPSTG AVAVAGSGGA KHTKVNGIGR RVRMPVLCAV RVFQLTKELG 60 HRTDGETIEW LLRHEEPAII AATGTGTVPS GYVITTADSV PLSRSPPSVL APVNRSQPVS 120 GFPVSGGIFS MTSPPPSCRL DLYQPALEFS GNEYRHMPFT ALLLQPVTAD DGEKKVVGED 180 ENK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009794398.1 | 1e-112 | PREDICTED: transcription factor TCP11 | ||||
Swissprot | Q9SJK7 | 2e-32 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A1U7XTX0 | 1e-111 | A0A1U7XTX0_NICSY; transcription factor TCP11 | ||||
STRING | XP_009794398.1 | 1e-111 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 2e-34 | TCP family protein |