PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf14310g00014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 337aa    MW: 36000.7 Da    PI: 6.7336
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf14310g00014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.61.1e-15249284134
                      GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C++Cg ++  Tp++Rrgp g+++LCnaCGl+++ kg
  Niben101Scf14310g00014.1 249 CRHCGISSksTPMMRRGPAGPRSLCNACGLKWANKG 284
                               *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.0E-11113148IPR010399Tify domain
PROSITE profilePS5132014.19113148IPR010399Tify domain
PfamPF062002.0E-11116147IPR010399Tify domain
PROSITE profilePS5101713.205180222IPR010402CCT domain
PfamPF062034.2E-16180222IPR010402CCT domain
SMARTSM004012.0E-11243297IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.721243291IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.37E-11244294No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14247290IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.74E-14248296No hitNo description
PfamPF003201.2E-13249284IPR000679Zinc finger, GATA-type
PROSITE patternPS003440249276IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MAESNRRANM FGRETINAAL HHQQTQIDDD DDDDVAAVTE GGGGGGGGCG GGRESMDNKP  60
SIRYDHHHQS HSHSHALHNG GESMEMNGVE GVSHNALYCP PNTEIVPAGV ATGSGASDQL  120
TLSFQGEFYV FDAVSPEKVQ AVLLLLGGYE VPAGIPTVSV AAQSQRASTN FPGRLNQPQR  180
AASLNRFREK RKERCFDKKI RYTVRKEVAM RMQRKKGQFT SSKSISDEAG SSSADWNEGS  240
GQEEQETSCR HCGISSKSTP MMRRGPAGPR SLCNACGLKW ANKGILRDLS KVPTPGPQDQ  300
TAKSGEQSNG EPNGSDAMAA AAIITPDSDN TVVTAER
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609389.10.0PREDICTED: GATA transcription factor 28-like
SwissprotQ8GXL71e-82GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1S4B0D60.0A0A1S4B0D6_TOBAC; GATA transcription factor 24-like
STRINGXP_009609389.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-87ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]