PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf14118g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 180aa MW: 21282.9 Da PI: 4.8893 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.5 | 6.4e-18 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll++++ G g+W++ a++ g++Rt+k+c++rw++yl Niben101Scf14118g00011.1 23 RGPWTLEEDNLLIHYISNNGEGRWNALAKCAGLKRTGKSCRLRWLNYL 70 89********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-22 | 17 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.292 | 18 | 74 | IPR017930 | Myb domain |
SMART | SM00717 | 7.9E-15 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-17 | 23 | 70 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.55E-22 | 24 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.10E-11 | 25 | 70 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.3E-7 | 74 | 97 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MSKNIVIMSN NSSNEEDQFE LRRGPWTLEE DNLLIHYISN NGEGRWNALA KCAGLKRTGK 60 SCRLRWLNYL KPDIKRGNLT PQEQLLILEL HSKWGNRMYS TDSMNMLKLQ PHEMTQDFTI 120 YNNSVQNECY HVESLNQQPD FSSQEMSISE CDVAEFHWFS DEMAATSLWN MDEFWQFRML |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-14 | 20 | 97 | 24 | 100 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019256818.1 | 2e-63 | PREDICTED: transcription factor MYB108-like | ||||
TrEMBL | A0A1J6I9Z5 | 4e-62 | A0A1J6I9Z5_NICAT; Transcription factor myb108 | ||||
STRING | XP_009797951.1 | 7e-63 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 5e-48 | myb domain protein 62 |