PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13942g00027.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 448aa    MW: 49446.1 Da    PI: 5.1761
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13942g00027.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-10385430655
                               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +++Er RR ri +++ +L+el+P+     +k  + a++L  A +YIk+L+
  Niben101Scf13942g00027.1 385 SIAERVRRMRISERMRKLQELVPNM----DKQTNTADMLDFAADYIKELE 430
                               689*********************7....688***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.303379429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14382441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.66E-10383434No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13384441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-11385435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-7385430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDHRSHQQQQ MTSGLTRYRS APSSYFSSLL SSNNPATVAS GGGNCGYARD DFDQLLNSRA  60
SNTDIKQVFD RFVANIDHQD MNSNGLIGDT QQLQQNHMSN MNVRSEVVAP TKQEHDQSQA  120
RQSQNSQFIA AVKQETQQNS DYSLASQMNY QTQAQQNDNS DLTSAMDNFA RFLGAADTNR  180
LNQTKMDGGF GTGSSNSNLT RYNSSPAGFF AQFDIENEYG AMRGIGGYGV GSNAAAEASF  240
PTPNRFSSQT ALQSGQPPSS GLLAPISEFG AKSIEESRAD DESFGKGHKN DESYMTGFSI  300
PSWDDSQMLT DDFLQVPEDN EAEPFSNVNA CDNQNSEVRA RPPTLLSHLS LPQTSAELSA  360
MEKLLQDSVP CKVRAKRGCA THPRSIAERV RRMRISERMR KLQELVPNMD KQTNTADMLD  420
FAADYIKELE TQVKALSERR SKCTCSNK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016433537.10.0PREDICTED: transcription factor bHLH122-like
RefseqXP_016433545.10.0PREDICTED: transcription factor bHLH122-like
TrEMBLA0A1S3X0U30.0A0A1S3X0U3_TOBAC; transcription factor bHLH122-like
STRINGXP_009618593.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46052239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.19e-50bHLH family protein