PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf13758g00012.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 313aa MW: 35176.2 Da PI: 7.2184

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf13758g00012.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.4	1.2e-32	163	221	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s+fprsYYrCt+ +C vkk+vers +d+++v++tYeg+H+h+ Niben101Scf13758g00012.1 163 LDDGFRWRKYGQKAVKSSPFPRSYYRCTTVSCGVKKRVERSIKDTSIVVTTYEGTHTHP 221 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.7E-32	148	221	IPR003657	WRKY domain
SuperFamily	SSF118290	6.41E-28	155	221	IPR003657	WRKY domain
PROSITE profile	PS50811	29.046	158	223	IPR003657	WRKY domain
SMART	SM00774	6.2E-37	163	222	IPR003657	WRKY domain
Pfam	PF03106	1.2E-25	164	221	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0009733	Biological Process	response to auxin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MEKENKLKAE TSFENPMFSQ QIQTSFSFPN IFDMLCETEK DSIGFLDNIF GAHLLDFNTN 60 TPSIFDLLQT PPPQTNIPSP TSTFQESFEV EVVNNNPATP NSLSISSSST EAADGDEHSR 120 RVDQQDEDQD KYKKQLKPKK KNVQKRQREP RFAFVTKSEI DHLDDGFRWR KYGQKAVKSS 180 PFPRSYYRCT TVSCGVKKRV ERSIKDTSIV VTTYEGTHTH PCRITPLRGS IGGVLPRTTA 240 YYGGAIGGGG TCSNSSLSIP QLQYYQEQQQ RVLHLPITTL PLNNFSVGYS SLVSTNSFQD 300 HGLLHDIEKD SGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-25	156	220	10	74	Probable WRKY transcription factor 4
2lex_A	1e-25	156	220	10	74	Probable WRKY transcription factor 4
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00069	PBM	Transfer from AT2G47260	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009770697.1	1e-154	PREDICTED: probable WRKY transcription factor 23
Refseq	XP_016465324.1	1e-154	PREDICTED: probable WRKY transcription factor 23
TrEMBL	A0A1S3ZLZ8	1e-152	A0A1S3ZLZ8_TOBAC; probable WRKY transcription factor 23
TrEMBL	A0A1U7VS39	1e-152	A0A1U7VS39_NICSY; probable WRKY transcription factor 23
STRING	XP_009770697.1	1e-153	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1309	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	2e-42	WRKY DNA-binding protein 23