PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13710g03006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 411aa    MW: 46713.2 Da    PI: 9.554
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13710g03006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.5e-15453148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                              r+rW +eEd ll  +vkq+G++ W++I+++mg  + R +k+c +rw +yl
  Niben101Scf13710g03006.1  4 RQRWRPEEDALLGAYVKQYGPKEWNLISKRMGktLDRDPKSCLERWKNYL 53
                              89**********************************************97 PP
2Myb_DNA-binding35.72e-1159103147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +g+ T+eE+ l + + +++G++ Wk+Ia++++ gRt+k +  +w  +
  Niben101Scf13710g03006.1  59 KGSLTPEEQNLVISLQAKYGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103
                               6788******************.*********.*****999999766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.979157IPR017930Myb domain
SMARTSM007176.2E-13355IPR001005SANT/Myb domain
SuperFamilySSF466895.14E-22498IPR009057Homeodomain-like
CDDcd001671.51E-9653No hitNo description
Gene3DG3DSA:1.10.10.601.8E-20660IPR009057Homeodomain-like
PfamPF139211.2E-13768No hitNo description
PROSITE profilePS5129418.50758108IPR017930Myb domain
SMARTSM007174.1E-1058106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-1661108IPR009057Homeodomain-like
CDDcd001674.70E-763104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MKERQRWRPE EDALLGAYVK QYGPKEWNLI SKRMGKTLDR DPKSCLERWK NYLKPGIKKG  60
SLTPEEQNLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKQ LQKSQKLQDY  120
ADQLSVSTVS GGGSPEGAVS GKYDHILETF AEKYXQPSVS TVSGGGSPEG AVSGKYDHIL  180
ETFAEKYVQP KIFSFQPPLP LPAINIMPNL EPPRVLSLSP ASMTEPVNST TIPPWMNSAA  240
NASSSTPSPS VSLTLTPSEP VLYVHEPVQP EYDSTSRFYP VQQLGTLIQY CKELEEGKQN  300
WVQHKKEATW RLNRLEQQLE SEKARKRREK MEEIEAKMMC LREEEMVLIG RMEREYKDQL  360
SALQRDAEAK EAKLIEAWSN KQLKLAKLIE KQTGCHSHVN GVGNIVSKDK H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-15792789MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-1479230112MYB TRANSFORMING PROTEIN
1mse_C6e-15792789C-Myb DNA-Binding Domain
1msf_C6e-15792789C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324329RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016443007.10.0PREDICTED: protein rough sheath 2 homolog
TrEMBLA0A1S3XTJ30.0A0A1S3XTJ3_TOBAC; protein rough sheath 2 homolog
STRINGXP_009630091.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29332445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.13e-86MYB family protein