PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf13231g02015.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 759aa    MW: 82316.5 Da    PI: 6.877
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf13231g02015.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.3e-07314334526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               +C+ f++ G C++Gd C +aHg
  Niben101Scf13231g02015.1 314 PCPEFRK-GACRRGDMCEYAHG 334
                               8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.44E-1738168IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.6E-1841212IPR020683Ankyrin repeat-containing domain
PfamPF127966.4E-1076158IPR020683Ankyrin repeat-containing domain
CDDcd002041.57E-1588167No hitNo description
PROSITE profilePS5029716.04389191IPR020683Ankyrin repeat-containing domain
SMARTSM002480.002989119IPR002110Ankyrin repeat
PRINTSPR014153.2E-590105IPR002110Ankyrin repeat
PROSITE profilePS5008811.274124159IPR002110Ankyrin repeat
SMARTSM002484.3E-4124156IPR002110Ankyrin repeat
PRINTSPR014153.2E-5143157IPR002110Ankyrin repeat
SMARTSM003569.5E-6309335IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4314334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981314336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4342372IPR000571Zinc finger, CCCH-type
SMARTSM0035668344367IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
WAIKLAEACA LAQKDPILVH LPTNPLLILN LGITKLTVET EDSFSSLLEL AANNDLEGFK  60
RSVERDASAI DEVGLWLVRK KGAKQIVNEE RTPLMVAATY GSIDVLKLII SNPVVDVNRA  120
CGPNKCTALH CATSGGSVIA VDVVKFLLSA GADPNIEDSN GQRPVDMIVV PPKLHGARAS  180
LEELLLKNSS DGSVGECKLR VSVTTSNGSS PVLSSSPENG SPFSPSDSLC SPMASKFSDI  240
PANSAPEKKE YPIDPSLPDI KNSIYSTDEF RMFSFKVRPC SRAYSHDWTE CPFAHPGENA  300
RRRDPRKYHY SCVPCPEFRK GACRRGDMCE YAHGVFECWL HPAQYRTRLC KDGTSCARRV  360
CFFAHTTEEL RPLYVSTGSA VPSPRSAASA ATVMDMAAAL NLFPGSPSSH SVMSPPAFNQ  420
PMSPTANGIS HPSAPWPQPN VPALHLPGSN LQSSRLRSSL SARDIPPEDF NMLHDFDAQQ  480
LVLNDMACYS QPHPNSLNRS GRSNTLTPSN LEELFSAEIT SSPRYSDQAA ASGVFSPSHK  540
SAFFNQFQQQ QSMLSPINTN VFSPKNMEHP LLQASFGVSS PXPINTNVFS PKNMEHPLLQ  600
ASFGVSSPGR MSPRSMEPIS PMSARLSAFA QREKQQQQLR SLSSRDLGSN NASIVGSPVG  660
NSWSNWGSPT GKVDWSVNGS GVGRMRRSSS FEQLNNGEEP DLSWVQSLVK ESPSEMKEKQ  720
AAPISGTVPS GESLSKVDTV DHSVLGAWLE QMQLDQLVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016467805.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A1S3ZTR40.0A0A1S3ZTR4_TOBAC; zinc finger CCCH domain-containing protein 30-like
STRINGXP_009799603.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]