PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12560g00018.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 259aa    MW: 29633.6 Da    PI: 5.753
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12560g00018.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.65.4e-23167225259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                D+++WrKYG K   gs+f +sYYrC    +Cp++++v++s++d + v++tY+g+H h+
  Niben101Scf12560g00018.1 167 ADQWRWRKYGMKRTGGSPFLKSYYRCNEVeNCPARRHVQQSSTDANKVVVTYRGQHIHH 225
                               59************************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-23160227IPR003657WRKY domain
PROSITE profilePS5081123.915161227IPR003657WRKY domain
SuperFamilySSF1182905.36E-20164227IPR003657WRKY domain
SMARTSM007742.6E-23166226IPR003657WRKY domain
PfamPF031063.3E-19168225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDENDWDLWA IVRSCYNVNR AIPDDDVRSC NNVNITALID HNVDEDTSHG NSATNTKTPT  60
FFPEQSDWFG DFSDLFPQEN EHCFGLDEVC CFSKNENTNS RIEPHNPENK TETVTNPPLV  120
VEHEEMKKNK KASGSMQLSI IEEGKAFSYR GKSTERYEIL TEKLSEADQW RWRKYGMKRT  180
GGSPFLKSYY RCNEVENCPA RRHVQQSSTD ANKVVVTYRG QHIHHPPNQH IAMVHTSQNA  240
NAPVQDPSFP SSTSTSLFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-131682271674WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016461607.11e-171PREDICTED: probable WRKY transcription factor 50
TrEMBLA0A1S3ZBK01e-169A0A1S3ZBK0_TOBAC; probable WRKY transcription factor 50
STRINGXP_009785821.11e-169(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA110911323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.16e-18WRKY DNA-binding protein 27