PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf12405g00017.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 418aa MW: 48554.3 Da PI: 6.3323

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf12405g00017.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.9	3.2e-24	93	188	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tses 75 +Wt+q+v++Li+a+++++e+ ++ kk++W++vsk+m+erg +sp+qC++k+++lnkryk+++e+ +++ ++e+ Niben101Scf12405g00017.1 93 KWTDQMVRLLITAVSYIGEETATEYggrrkcsnlHKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEV 177 7************999998875333345567799******************************************66999 PP trihelix 76 sstcpyfdqle 86 +++ ++++ l+ Niben101Scf12405g00017.1 178 VENPALLNVLD 188 99999988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.9E-23	91	214	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MMPGNSCFDL QGSMRANHQQ LQHYQSHSKQ GAINANFPLT IGSMQQDCNQ NISLADRGKS 60 ASDEDEPSFT EDAADGLNDL NRGKKATPWQ RVKWTDQMVR LLITAVSYIG EETATEYGGR 120 RKCSNLHKKG KWKSVSKVMA ERGHFVSPQQ CEDKFNDLNK RYKRLNEILG RGTSCEVVEN 180 PALLNVLDHV SEKGKEEVRK ILSSKHLHYE EMCSYHNGNR LHLPPDLELQ RSLRLALTSR 240 EEHDDTDVRK HMQDDNDEDD HETDLVEDQD EYEENHSLPR EHRLHGMSGG FSKRIKQCQG 300 HETVTFGNSL TTVDGNRTFA SQPQKANTDA NQMFSECNKA DILQKQWMDH RSFQLEEQKL 360 QIQAQMLELE KERFNWKRFS RKKDIELEMM RMENERIKLE NECMTLELKR KEMLAENV

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MMPGNSCFDL QGSMRANHQQ LQHYQSHSKQ GAINANFPLT IGSMQQDCNQ NISLADRGKS  60
ASDEDEPSFT EDAADGLNDL NRGKKATPWQ RVKWTDQMVR LLITAVSYIG EETATEYGGR  120
RKCSNLHKKG KWKSVSKVMA ERGHFVSPQQ CEDKFNDLNK RYKRLNEILG RGTSCEVVEN  180
PALLNVLDHV SEKGKEEVRK ILSSKHLHYE EMCSYHNGNR LHLPPDLELQ RSLRLALTSR  240
EEHDDTDVRK HMQDDNDEDD HETDLVEDQD EYEENHSLPR EHRLHGMSGG FSKRIKQCQG  300
HETVTFGNSL TTVDGNRTFA SQPQKANTDA NQMFSECNKA DILQKQWMDH RSFQLEEQKL  360
QIQAQMLELE KERFNWKRFS RKKDIELEMM RMENERIKLE NECMTLELKR KEMLAENV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019235880.1	0.0	PREDICTED: uncharacterized protein LOC109216202 isoform X1
TrEMBL	A0A1J6K3J0	0.0	A0A1J6K3J0_NICAT; Uncharacterized protein
STRING	XP_009799706.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7600	18	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-147	sequence-specific DNA binding transcription factors