PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf12293g01002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 329aa MW: 36428.3 Da PI: 6.5253

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf12293g01002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.8	2.1e-09	47	96	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL l + +K++Ka+iL +++ +k+L Niben101Scf12293g01002.1 47 RKVQKADREKLRRDRLNEQFTELGNTLDPE----RPKNDKASILSDTIQALKDL 96 5677889******************997....69***********99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.2E-11	46	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.23	46	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.22E-6	47	100	No hit	No description
Pfam	PF00010	3.0E-7	47	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.94E-13	47	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-6	52	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MDELKCQTSY QSNHIPNPSV SDSTQLPPDS STKQRPEAEL KDSIAARKVQ KADREKLRRD 60 RLNEQFTELG NTLDPERPKN DKASILSDTI QALKDLTAQV GKLKSEYAAL TDESQEQLTQ 120 EKTDLREEKA SLKSDIESLN AQYQQRLRTM YPWAGMDPSM VMHPPTYSYP VPVPIPTGAI 180 PMHSSLQPYP FFGNQNPAAV PNPCSPFVQY MAPSTQMEQQ PAQQISPVMQ PSNRTHGSGR 240 HDSRNKSSDQ GESRIERNED SNEVATNLEL KTPAPASEQE LSSGQRISRK PSSKVNSLSD 300 GSSSSRCSSS HSVQALSSNS VVRGKKTDD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783164.1	0.0	PREDICTED: transcription factor bHLH121-like
Refseq	XP_016504316.1	0.0	PREDICTED: transcription factor bHLH121-like
Swissprot	Q9LT23	1e-80	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A1S4CT79	0.0	A0A1S4CT79_TOBAC; transcription factor bHLH121-like
TrEMBL	A0A1U7X8A6	0.0	A0A1U7X8A6_NICSY; transcription factor bHLH121-like
STRING	XP_009783164.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5456	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	2e-83	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]