PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf12210g08011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 379aa    MW: 42647.7 Da    PI: 6.6183
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf12210g08011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.4e-21162211255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a+++a++k++g
  Niben101Scf12210g08011.1 162 RYRGVRQRP-WGKWAAEIRDPY----KaTRVWLGTFDTAEAAARAYDEAALKFRG 211
                               7********.**********76....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.1E-23162220IPR016177DNA-binding domain
PfamPF008474.4E-14162211IPR001471AP2/ERF domain
PROSITE profilePS5103225.673162219IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-33162220IPR001471AP2/ERF domain
SMARTSM003803.6E-39162225IPR001471AP2/ERF domain
PRINTSPR003676.4E-12163174IPR001471AP2/ERF domain
CDDcd000185.46E-16170221No hitNo description
PRINTSPR003676.4E-12185201IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MCIYKVANSN RRRHEDRDDN YNVLESMFSG NINREEEMSV IVSALTHVVA GEDRRRVINN  60
QVLLADESGA AENNFGSGFS SVTWGVGEKR GRNEEQKGRH FLHIGTSHIR SSGGEGTSIR  120
TITSSTPATE ATFIYTSTND HQNSSSDQSS GGDNNNNQAR RRYRGVRQRP WGKWAAEIRD  180
PYKATRVWLG TFDTAEAAAR AYDEAALKFR GSKAKLNFPE NVKLLSSPIF SDFPNTLYSI  240
SSSPDPIVHT SLYRPNFIEY PLRDDEPIVH TSQYHSSFID RPPTDEPILH TTHHQALNNS  300
TDLNDQTFTN EFHRLHLPYF PNMFLSPIQP QVHIQLDASQ SEPVTEALAP PLSQSSRSNF  360
QTASNWSNLV YDHPSFSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-23161222163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589948.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A1U7WM690.0A0A1U7WM69_NICSY; ethylene-responsive transcription factor ERF036-like
STRINGXP_009589948.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.16e-21ERF family protein