PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf12127g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 448aa MW: 50596.4 Da PI: 5.9723

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf12127g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.2	7.8e-22	125	221	1	85
trihelix 1 rWtkqevlaLiearremeerlr.rgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.ts 73 +Wt++ v++Li+++ ++++ + +g +kk++W+ vs+ m++ g+++sp+qC++k+++lnkrykk++++ +++ ++ Niben101Scf12127g00002.1 125 KWTDNVVRLLIQVVACVGDDGSlEGTeglkrksgciQKKGKWKTVSRIMMSNGCRVSPQQCEDKFNDLNKRYKKLNDILGRGtSC 209 7************777777632224555667889********************************************568 PP trihelix 74 essstcpyfdql 85 ++++ ++ d++ Niben101Scf12127g00002.1 210 AVVENPALMDSM 221 999988888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.5E-18	123	248	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MNSSGMSGGF LSGYNGGFLG MNRLQQPQLN SNNAVHGHQT NHNNVQSSMS TKLGLENDKQ 60 IDLMDVKSCM PFGKDKAVGP SNVVNSSNHN NNTSDEDEPS FTEDGIGDNN GGALGKKGSP 120 WQRMKWTDNV VRLLIQVVAC VGDDGSLEGT EGLKRKSGCI QKKGKWKTVS RIMMSNGCRV 180 SPQQCEDKFN DLNKRYKKLN DILGRGTSCA VVENPALMDS MPQLSAKAKD TVKKILNSKH 240 LFYREMCAYH NGQKIPDWND LEFPVHSSPA AAQCAKDNNG SQGDEAEENN ESDDESNDEE 300 DNHGVDERMG RVEENGNFLP HTSGNDNFIA EINEFFQDPT KSKWEQKMWI KKRMLQLEEE 360 KIGIQAEALE LEKRQFKWQR FCWKKDRELE IERLENEKLI LENEHMSLQL KHKELEIDSK 420 KPNISFSSAP LSIDRPRGRD QIDAARYH

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MNSSGMSGGF LSGYNGGFLG MNRLQQPQLN SNNAVHGHQT NHNNVQSSMS TKLGLENDKQ  60
IDLMDVKSCM PFGKDKAVGP SNVVNSSNHN NNTSDEDEPS FTEDGIGDNN GGALGKKGSP  120
WQRMKWTDNV VRLLIQVVAC VGDDGSLEGT EGLKRKSGCI QKKGKWKTVS RIMMSNGCRV  180
SPQQCEDKFN DLNKRYKKLN DILGRGTSCA VVENPALMDS MPQLSAKAKD TVKKILNSKH  240
LFYREMCAYH NGQKIPDWND LEFPVHSSPA AAQCAKDNNG SQGDEAEENN ESDDESNDEE  300
DNHGVDERMG RVEENGNFLP HTSGNDNFIA EINEFFQDPT KSKWEQKMWI KKRMLQLEEE  360
KIGIQAEALE LEKRQFKWQR FCWKKDRELE IERLENEKLI LENEHMSLQL KHKELEIDSK  420
KPNISFSSAP LSIDRPRGRD QIDAARYH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009768464.1	0.0	PREDICTED: uncharacterized protein LOC104219473
TrEMBL	A0A1U7W1F4	0.0	A0A1U7W1F4_NICSY; uncharacterized protein LOC104219473
STRING	XP_009768464.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12913	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	1e-70