PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf12084g00003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 159aa MW: 18562.8 Da PI: 8.0509

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf12084g00003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.7	1.6e-30	77	135	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk s++pr+YY+C++ gC+vkk+ver+++d ++v++tYeg Hnhe Niben101Scf12084g00003.1 77 LDDGFKWRKYGKKMVKTSPNPRNYYKCSTGGCNVKKRVERDNDDSSYVITTYEGIHNHE 135 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.2E-32	63	137	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-27	70	137	IPR003657	WRKY domain
PROSITE profile	PS50811	30.641	72	137	IPR003657	WRKY domain
SMART	SM00774	9.8E-35	77	136	IPR003657	WRKY domain
Pfam	PF03106	1.1E-23	78	135	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MENFQYSNPN PNYGATDFIG TPEYELSDYF FPVDGLSDDF LLQKDMTSEF IQSVKKYNKV 60 NAKSRVALRF KSELEVLDDG FKWRKYGKKM VKTSPNPRNY YKCSTGGCNV KKRVERDNDD 120 SSYVITTYEG IHNHESPCVL HYTQFPPNFP TYGLHNLRH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-25	67	137	7	77	Probable WRKY transcription factor 4
2lex_A	8e-25	67	137	7	77	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009779355.1	1e-102	PREDICTED: probable WRKY transcription factor 50
Refseq	XP_016509832.1	1e-102	PREDICTED: probable WRKY transcription factor 50
TrEMBL	A0A1S4D8U5	1e-100	A0A1S4D8U5_TOBAC; probable WRKY transcription factor 50
TrEMBL	A0A1U7WYP0	1e-100	A0A1U7WYP0_NICSY; probable WRKY transcription factor 50
STRING	XP_009779355.1	1e-101	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2124	24	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	4e-38	WRKY DNA-binding protein 50