PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11805g02005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 383aa    MW: 44215.9 Da    PI: 6.0274
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11805g02005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.73.6e-07132156630
                               HHHHHHHHHHHHHHHHHHHCTSCCC CS
                       HLH   6 nerErrRRdriNsafeeLrellPka 30 
                                e+Er+RR+++ + ++ Lr+llP  
  Niben101Scf11805g02005.1 132 REIERQRRQEMSNLYASLRQLLPLE 156
                               69*********************85 PP
2HLH34.24.6e-11238285655
                               HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                e+Er+RR+++ + ++ Lr+llP       ++K s ++   +Av+YI +Lq
  Niben101Scf11805g02005.1 238 REIERQRRQEMSNLYASLRQLLPLeY---LKGKRSTSDHILEAVNYIVQLQ 285
                               69**********************77...9*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575127No hitNo description
SuperFamilySSF474591.1E-5125156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-4126158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.905126176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM0035311132182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-4132156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-13231302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.805232284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-9237301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-4238290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-8238285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MVMEIEKDQE LLSEDITALQ SLAISSCLSC NQLYVWFEVF FILSNDDDND NHQLLYPPTI  60
TNSSSFLYYQ EDDLVTDLTP FHSLEGDRKN VDFDSTNKIN KRGKKSQNSS SAVSLQFDEN  120
TTDCKQKKII RREIERQRRQ EMSNLYASLR QLLPLEYLKL LYPPTITNSS SFLYYQEDDL  180
VTDLTPFHSL EGDRKNVDFD STNKINKRGK KSQNSSSAVS LQFDENTTDC KQKKIIRREI  240
ERQRRQEMSN LYASLRQLLP LEYLKGKRST SDHILEAVNY IVQLQKKVRK IEENRDKLKM  300
ALSSSDVDYP KSGCSSSSHE SSEAIITVLI CLDGMEILTD CSVTNERFCL SRVLEVLLRE  360
GLSIQSCSCN KVNGRLRHTI RTE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009624566.11e-126PREDICTED: transcription factor bHLH118-like
TrEMBLA0A1S3XVI91e-124A0A1S3XVI9_TOBAC; transcription factor bHLH118-like
STRINGXP_009624566.11e-125(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62975.12e-21bHLH family protein