PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf11670g03002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NAC | ||||||||
Protein Properties | Length: 305aa MW: 35299 Da PI: 6.4452 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.2 | 1.3e-52 | 15 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgy 82 +ppGfrFhPt+eel+++yLkkkv+ +k++l +vi+evd++++ePwd+++k+k +++wyfFs++dkky+tg+r+nrat++g+ Niben101Scf11670g03002.1 15 VPPGFRFHPTEEELLQYYLKKKVAIEKIDL-DVIQEVDLNNLEPWDIQEKCKIgstPQNDWYFFSHKDKKYPTGSRTNRATAAGF 98 69****************************.9***************964444222455************************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg+dk ++s +++ +g++ktLvfykgrap+g+k+dW+mheyrl Niben101Scf11670g03002.1 99 WKATGRDKVIYS-NSRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 143 ************.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-54 | 9 | 148 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.735 | 15 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-28 | 16 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MPDNMSISVN GQSQVPPGFR FHPTEEELLQ YYLKKKVAIE KIDLDVIQEV DLNNLEPWDI 60 QEKCKIGSTP QNDWYFFSHK DKKYPTGSRT NRATAAGFWK ATGRDKVIYS NSRRIGMRKT 120 LVFYKGRAPH GQKSDWIMHE YRLDDHSCNI KKNHFKSLEM VNPSISDTRI NQIIYPNDEG 180 ALEQLLQYMR NTCKEENHSN YDLNFNDKFM QLPTLDSPNS SYDDFPKSIN SEGGLNNWIA 240 VDRLVASHLN GQTSDNYNHD YEHQYNSNGG GGSTNHDYNE ECDLWSFSRV STNDHSLCHV 300 SNRPV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-47 | 9 | 143 | 9 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009791966.1 | 0.0 | PREDICTED: NAC domain-containing protein 43-like | ||||
Refseq | XP_016450002.1 | 0.0 | PREDICTED: NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 1e-105 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A1S3YDD0 | 0.0 | A0A1S3YDD0_TOBAC; NAC domain-containing protein 43-like | ||||
TrEMBL | A0A1U7XQR7 | 0.0 | A0A1U7XQR7_NICSY; NAC domain-containing protein 43-like | ||||
STRING | XP_009791966.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-107 | NAC family protein |