PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf11491g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 295aa    MW: 33379.6 Da    PI: 7.9084
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf11491g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.11.1e-192471148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg+WT eEd llv+++ q+G g+W+ +a++ g++Rt+k+c++rw++yl
  Niben101Scf11491g01002.1 24 RGPWTVEEDSLLVNYISQHGEGRWNMVAHRAGLKRTGKSCRLRWLNYL 71
                              89********************************************97 PP
2Myb_DNA-binding52.31.3e-1677120146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg+ T+ E++l+++++ +lG++ W++Ia++++ gRt++++k++w++
  Niben101Scf11491g01002.1  77 RGNLTPHEQLLILELHSKLGNR-WSKIAQYLP-GRTDNEIKNYWRT 120
                               7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.881975IPR017930Myb domain
SuperFamilySSF466894.87E-3221118IPR009057Homeodomain-like
SMARTSM007171.1E-162373IPR001005SANT/Myb domain
PfamPF002492.2E-172471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-232578IPR009057Homeodomain-like
CDDcd001674.31E-132671No hitNo description
PROSITE profilePS5129420.00476126IPR017930Myb domain
SMARTSM007171.1E-1476124IPR001005SANT/Myb domain
PfamPF002496.5E-1577120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2379125IPR009057Homeodomain-like
CDDcd001672.11E-1181120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
METDMSFLSK SSSSSSDGEI GLRRGPWTVE EDSLLVNYIS QHGEGRWNMV AHRAGLKRTG  60
KSCRLRWLNY LKPDVKRGNL TPHEQLLILE LHSKLGNRWS KIAQYLPGRT DNEIKNYWRT  120
RVQKQARHLK IDSKSAAFQH MIRCLWIPRL LQKIQGSSAI PSIQTSQSTS LVDSKYGPLN  180
ITEITQTPQV LSLENKSISS SCCSSSSTSS ESMSIYKSAN IISECPKLPP REMGDSELNT  240
FVNTHFPFDD NSYDMETFIS ETGIFLTNYD QTVGGENNLM GGDILAYSFW SMDQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27221265108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804370.11e-175PREDICTED: transcription factor MYB57-like
RefseqXP_016509791.11e-175PREDICTED: transcription factor MYB57-like isoform X1
SwissprotQ9C9G72e-74MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A1S4D8T71e-173A0A1S4D8T7_TOBAC; transcription factor MYB57-like isoform X1
TrEMBLA0A1U7Z0B81e-173A0A1U7Z0B8_NICSY; transcription factor MYB57-like
STRINGXP_009804370.11e-174(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.13e-75myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]