PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf11399g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 199aa MW: 21955.3 Da PI: 10.0964 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32 | 2.1e-10 | 16 | 35 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCk+G++CkF+H++ Niben101Scf11399g00014.1 16 YYLKTGTCKFGATCKFHHPR 35 8*****************96 PP | |||||||
2 | zf-CCCH | 35.6 | 1.5e-11 | 58 | 81 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C +++rt +Ck+G++CkF+H++ Niben101Scf11399g00014.1 58 NECTYYMRTAQCKFGSTCKFHHPE 81 68********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.915 | 8 | 36 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.64 | 9 | 35 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-5 | 15 | 37 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 16 | 35 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-8 | 16 | 35 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.011 | 54 | 81 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.375 | 55 | 82 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 56 | 82 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-9 | 57 | 81 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-4 | 60 | 80 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MHDLLNKLSQ LVLNWYYLKT GTCKFGATCK FHHPRDKAGI AGRVTLNVLG YPLHPNENEC 60 TYYMRTAQCK FGSTCKFHHP EPSNMMVSSR GSTVYPPGPS STTPGMPTRL SLGSMSLVLD 120 MTMKGAEAYE GHSWSGAIAA SLMSPWQGET SLRAQAGRAC PGRYGTPRAR SAAVRVIWYQ 180 SKHALQLLWR GVKLMNAQS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009769505.1 | 3e-60 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X4 | ||||
TrEMBL | A0A1U7W5G8 | 8e-59 | A0A1U7W5G8_NICSY; zinc finger CCCH domain-containing protein ZFN-like isoform X4 | ||||
STRING | XP_009769498.1 | 9e-59 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 5e-36 | zinc finger protein 1 |