PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf11000g00005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 726aa MW: 80056.7 Da PI: 6.9061

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf11000g00005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.8e-07	307	327	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg Niben101Scf11000g00005.1 307 PCPEFRK-GACQRGDMCEYAHG 327 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	3.42E-15	40	166	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.12	86	116	IPR002110	Ankyrin repeat
Gene3D	G3DSA:1.25.40.20	1.3E-16	86	166	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.84E-13	86	164	No hit	No description
PROSITE profile	PS50297	15.592	86	161	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	6.8E-10	86	155	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	3.5E-5	121	153	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.289	121	156	IPR002110	Ankyrin repeat
SMART	SM00356	2.0E-5	302	328	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.6E-5	307	327	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.568	307	329	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-4	335	365	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	39	337	360	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence Send to blast
MTRMKFAIER SGMWILHISF CISWIATLNM NNLTVETEDS FVSLLELAAN NDIVAFKRWI 60 EHDLSGIHEV GLWYGRQKGS RQMVLEHRTP LLVAATYGSI DVLKLILSLP EVDVNQSCGR 120 DKSTALHCAA SSGSPNAVDT VKMLLEAGAD PNSEDANGHR PRDVIVVSPK FHSTESSLES 180 LLKSDTTGKC SLRLSTATSN SNSPPLSPSP GNRSPSSTSD STSSPKSAKS DDLPVSSASD 240 KKEYPIDPSL PDIKNSIYST DEFRMFSFKI RPCSRAYSHD WTECPFVHPG ENARRRDPRK 300 YHYSCVPCPE FRKGACQRGD MCEYAHGVFE CWLHPAQYRT RLCKDGTKCN RRVCFFAHTQ 360 EELRPLYVST GSAVPSPRSN TSAANPMDFA AAMGLIPCSP SSVRVMSPLP FTPPMSPSAN 420 GVSNMSWPQP NVPALHLPGS NFQSSRLRSS LHARDIRAED LNFDMQQQQQ FISEFSCLSQ 480 SSVNANSLNR LAHPKTVTPS NLEDLFSAES SSPRYSDQAL AQAVFSPTHK SSVLNQFQQQ 540 QQGMLFPITT KFSSIHVDNP LLQASFGVQT PGRMSPRGLE PISPMSSRVS TLSQCEKHQQ 600 FRSFSSRDLG SNASAVIGSP VDTWSKWGSS TGNADWAVTT EEFGRLKRSS SFELANNGEE 660 PDLSWVQSLV KESPQELKDK AASRVLGLAE STADLAEDST SNSQIEQFDQ LNAWMEQVKL 720 DKLMAQ

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence Send to blast

MTRMKFAIER SGMWILHISF CISWIATLNM NNLTVETEDS FVSLLELAAN NDIVAFKRWI  60
EHDLSGIHEV GLWYGRQKGS RQMVLEHRTP LLVAATYGSI DVLKLILSLP EVDVNQSCGR  120
DKSTALHCAA SSGSPNAVDT VKMLLEAGAD PNSEDANGHR PRDVIVVSPK FHSTESSLES  180
LLKSDTTGKC SLRLSTATSN SNSPPLSPSP GNRSPSSTSD STSSPKSAKS DDLPVSSASD  240
KKEYPIDPSL PDIKNSIYST DEFRMFSFKI RPCSRAYSHD WTECPFVHPG ENARRRDPRK  300
YHYSCVPCPE FRKGACQRGD MCEYAHGVFE CWLHPAQYRT RLCKDGTKCN RRVCFFAHTQ  360
EELRPLYVST GSAVPSPRSN TSAANPMDFA AAMGLIPCSP SSVRVMSPLP FTPPMSPSAN  420
GVSNMSWPQP NVPALHLPGS NFQSSRLRSS LHARDIRAED LNFDMQQQQQ FISEFSCLSQ  480
SSVNANSLNR LAHPKTVTPS NLEDLFSAES SSPRYSDQAL AQAVFSPTHK SSVLNQFQQQ  540
QQGMLFPITT KFSSIHVDNP LLQASFGVQT PGRMSPRGLE PISPMSSRVS TLSQCEKHQQ  600
FRSFSSRDLG SNASAVIGSP VDTWSKWGSS TGNADWAVTT EEFGRLKRSS SFELANNGEE  660
PDLSWVQSLV KESPQELKDK AASRVLGLAE STADLAEDST SNSQIEQFDQ LNAWMEQVKL  720
DKLMAQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009618285.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30 isoform X1
Refseq	XP_009618286.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30 isoform X1
Refseq	XP_016464875.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_016464876.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_016464877.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_018631218.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30 isoform X1
Refseq	XP_018631219.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30 isoform X1
Refseq	XP_019228555.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Refseq	XP_019228556.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A1S3ZKG8	0.0	A0A1S3ZKG8_TOBAC; zinc finger CCCH domain-containing protein 30-like
TrEMBL	A0A314KN38	0.0	A0A314KN38_NICAT; Zinc finger ccch domain-containing protein 30
STRING	XP_009618285.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA883	24	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]