PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10482g01024.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 271aa    MW: 30715.7 Da    PI: 4.3648
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10482g01024.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.5e-1881134356
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               k++++ ++q++ Le+ Fe ++++  e++ +LA++lgL+ rq+ +WFqNrRa++k
  Niben101Scf10482g01024.1  81 KKRRLLPNQVQFLEKSFEVDNKLEPERKVQLAQELGLQPRQIAIWFQNRRARYK 134
                               45578899*********************************************9 PP
2HD-ZIP_I/II1216e-3980169190
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               ekkrrl  +qv++LE+sFe ++kLeperKv+la+eLglqprq+a+WFqnrRAR+ktk lEkdy++Lk+++d+lk++ ++L ke +
  Niben101Scf10482g01024.1  80 EKKRRLLPNQVQFLEKSFEVDNKLEPERKVQLAQELGLQPRQIAIWFQNRRARYKTKLLEKDYDVLKASFDKLKDDYDTLFKESD 164
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLree 90 
                               +Lr+e
  Niben101Scf10482g01024.1 165 NLRNE 169
                               **965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-1869135IPR009057Homeodomain-like
PROSITE profilePS5007117.10376136IPR001356Homeobox domain
SMARTSM003894.6E-1879140IPR001356Homeobox domain
CDDcd000869.82E-1881136No hitNo description
PfamPF000461.6E-1581134IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-1884143IPR009057Homeodomain-like
PRINTSPR000314.7E-6107116IPR000047Helix-turn-helix motif
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
PRINTSPR000314.7E-6116132IPR000047Helix-turn-helix motif
PfamPF021831.0E-9137169IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEVGRVNEGS NMTTTNTVLP SEVLHNLWMS NSSPSFHGPT SMVNFEDGGG EIGKERSFFS  60
PIDKEEISND DYDSCFHQPE KKRRLLPNQV QFLEKSFEVD NKLEPERKVQ LAQELGLQPR  120
QIAIWFQNRR ARYKTKLLEK DYDVLKASFD KLKDDYDTLF KESDNLRNEK GKENEAVDAE  180
EGEKATPNVV TSEVPSIQKV VCKQEDASST KSDVIDSDSP HYTDGNHSSN AFEPDPSDFS  240
QDEDDNLSKS FLCFPEIGDQ IQANSFATVN L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230957.11e-176PREDICTED: homeobox-leucine zipper protein HAT5-like
TrEMBLA0A314KIA21e-175A0A314KIA2_NICAT; Homeobox-leucine zipper protein hat5
STRINGXP_009610614.11e-175(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-45homeobox 1