PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10228g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 488aa    MW: 54340.8 Da    PI: 9.374
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10228g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.2e-31193250260
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                DgynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkvers  d++  ei+Y+geHnh+k
  Niben101Scf10228g00007.1 193 YDGYNWRKYGQKQVKGSEYPRSYYKCTHLKCPVKKKVERSF-DGQSAEIVYRGEHNHPK 250
                               59***************************************.***************85 PP
2WRKY95.92.7e-30408463358
                               -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                      WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                               Dg++WrKYGqK+vkg+ +prsYYrCts++C v+k ver+++dpk+++ tYeg+Hnh
  Niben101Scf10228g00007.1 408 DGFRWRKYGQKVVKGNSYPRSYYRCTSPKCDVRKFVERTTDDPKAFINTYEGKHNH 463
                               9******************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.1E-28183251IPR003657WRKY domain
SuperFamilySSF1182902.88E-24190251IPR003657WRKY domain
SMARTSM007741.2E-34192250IPR003657WRKY domain
PfamPF031062.9E-24194249IPR003657WRKY domain
PROSITE profilePS5081123.789194251IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-30397466IPR003657WRKY domain
SuperFamilySSF1182901.01E-26401466IPR003657WRKY domain
PROSITE profilePS5081132.168401466IPR003657WRKY domain
SMARTSM007743.1E-33406465IPR003657WRKY domain
PfamPF031064.2E-24408463IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MEVNEGAKIA ISRPVASRPR CLIYKSFSEL LAGAIDISST DVHSEMDITA IRPKTVRLKP  60
TTNNALVGDL SSQVGISGAP VGSRSDNILQ LLEKPKVLYK PMAKLAPRKT IPLLENKGTS  120
ASDQQQQVAD REAHVHSANE VKQQHDLTTE SQHSRLAKSG QDKKVVHSTI VSENTEEVEQ  180
SLINTCNVDR PCYDGYNWRK YGQKQVKGSE YPRSYYKCTH LKCPVKKKVE RSFDGQSAEI  240
VYRGEHNHPK PQPPKRNLSD GQGRAAVCND NTKETNKSAW TNRHPHTSEA FICRMENQND  300
VGLSIHSAYS SKAPCFNDSI AAAEMHTAAR NSEDSAEGSK KLEATCDEPK TKRSLLFIAE  360
VIKLISDYYG VLLPRKTEGQ PNEAGTSGES AFPYMPNQNT TDSEITGDGF RWRKYGQKVV  420
KGNSYPRSYY RCTSPKCDVR KFVERTTDDP KAFINTYEGK HNHGVPNRRP NSESSKTSSK  480
SSAMKDKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-28194466177Probable WRKY transcription factor 4
2lex_A2e-28194466177Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235459.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_019235460.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_019235461.10.0PREDICTED: WRKY transcription factor 44
RefseqXP_019235462.10.0PREDICTED: WRKY transcription factor 44
TrEMBLA0A1J6K9360.0A0A1J6K936_NICAT; Wrky transcription factor 44
STRINGXP_009600193.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99512227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.13e-76WRKY family protein