PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf10124g03001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 214aa    MW: 24711.2 Da    PI: 8.3349
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf10124g03001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.47e-181158148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg W +eEd++l+++v+ +G g+W+tI+++ g+ R++k+c++rw +yl
  Niben101Scf10124g03001.1 11 RGFWKPEEDLILKNCVETHGEGNWATISEKSGLMRSGKSCRLRWKNYL 58
                              799*******************************************97 PP
2Myb_DNA-binding49.87.6e-1664109148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg ++++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Niben101Scf10124g03001.1  64 RGMMSEDEKDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEVKNFWNTHL 109
                               6789******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.394658IPR017930Myb domain
SuperFamilySSF466897.11E-298105IPR009057Homeodomain-like
SMARTSM007172.1E-141060IPR001005SANT/Myb domain
PfamPF002492.6E-151158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-211465IPR009057Homeodomain-like
CDDcd001674.79E-111458No hitNo description
PROSITE profilePS5129423.78859113IPR017930Myb domain
SMARTSM007173.7E-1463111IPR001005SANT/Myb domain
PfamPF002492.2E-1464109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2266112IPR009057Homeodomain-like
CDDcd001672.03E-1067109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDKEFKTRMK RGFWKPEEDL ILKNCVETHG EGNWATISEK SGLMRSGKSC RLRWKNYLRP  60
NIKRGMMSED EKDLIIRLHK LLGNRWSLIA GRLPGRTDNE VKNFWNTHLN KRSCRGKQKH  120
VKSNEANSRS PLGKESQEFP AETASNKEVA ANSVLDSWIE EMQDFNCSLL SPLSMNNVPF  180
LEDEPFIPIL DDIVLLEAFT SSGKEAWNEI QPFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-22111127107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235003.11e-154PREDICTED: transcription factor MYB82-like
SwissprotQ9LTF73e-60MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A1J6KXJ61e-153A0A1J6KXJ6_NICAT; Transcription factor myb82
STRINGXP_009593348.11e-153(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.11e-62myb domain protein 82