PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf10073g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 387aa MW: 39722.9 Da PI: 6.4336 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.6 | 8e-12 | 196 | 241 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y++ Lq Niben101Scf10073g00013.1 196 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVRFLQ 241 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.06E-16 | 189 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.65E-13 | 189 | 245 | No hit | No description |
PROSITE profile | PS50888 | 17.193 | 191 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-16 | 193 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-9 | 196 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.0E-13 | 197 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MQAMNSQMSL QEENGASSGQ NMSHSHFDPT SSHDDFLQQI LSSVPSSSPW PDLSSGGDGH 60 FDDQSIFVAS KLRQNQITGG GGGGAAAKAL MLQQQLLLSR GLLAGNGDQN DDVGNPENEI 120 SVQALYNGFA GSLGQTSNQP QHFHHAQGGS MQAQSFGAPA SSTMNQTPAA SGGSAGGGQP 180 KQQKVRARRG QATDPHSIAE RLRRERIAER MKSLQELVPN ANKTDKASML DEIIDYVRFL 240 QLQVKVLSMS RLGGAAAVAP LVADRSSEGG GGDCAQANGG GRGSNGTTSL ANNDSMTMTE 300 HQVAKLMEED MGSAMQYLQG KGLCLMPISL ATAISTATCH SMKLNNPLLH GGGSGGSAAI 360 NGGGGGPSSP SLSASTVQSA TMGNGGA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 200 | 205 | RLRRER |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019245333.1 | 0.0 | PREDICTED: transcription factor bHLH66-like | ||||
Swissprot | Q9ZUG9 | 4e-89 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | A0A1J6IF69 | 0.0 | A0A1J6IF69_NICAT; Transcription factor bhlh66 | ||||
STRING | XP_009619149.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3759 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 2e-60 | LJRHL1-like 1 |
Publications ? help Back to Top | |||
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