PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf09861g01009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 334aa MW: 37061.9 Da PI: 6.379 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.3 | 7.5e-10 | 246 | 289 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq Niben101Scf09861g01009.1 246 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 289 5679*******************5.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.167 | 239 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.1E-12 | 240 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-13 | 240 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.85E-11 | 241 | 293 | No hit | No description |
SMART | SM00353 | 9.6E-12 | 245 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.9E-7 | 247 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MSMALAKEHI MNDTRMGLVD NYEYYEGEFG MNDHSSPELY HGINEEAPKS VFEESENPEK 60 TSPNIAKNFA ISTSSSLSSP SSSNSNGHSV ISFKGGYGGN FMHSANGSLL SFEQSERFCP 120 NPRMSSNKVE CSVWEDNNLQ YNNSYNNYQN SLTSKGSSNT SPRVLINENS KNIQRANSYG 180 NSNGIPFGWL NSEANETVED LEREESRFNK RPCMEESVQT NKKQCTGGSK KAKSNTSVAT 240 KDPQSIAAKN RRERISERLK ILQELVPNGS KVDLVTMLEK AISYVKFLQV QVKVLATDEF 300 WPTQGGKAPD ISQVKDAIDA ILATQRDRNS SSKG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019252959.1 | 0.0 | PREDICTED: transcription factor bHLH83-like | ||||
Swissprot | Q9C707 | 1e-58 | BH083_ARATH; Transcription factor bHLH83 | ||||
TrEMBL | A0A1J6INI0 | 0.0 | A0A1J6INI0_NICAT; Transcription factor bhlh83 | ||||
STRING | XP_009599823.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9986 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 8e-60 | ROOT HAIR DEFECTIVE6 |