PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf09704g02001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 272aa MW: 29110.2 Da PI: 6.965 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.1 | 7e-21 | 27 | 77 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAaka++aa+++++g+ Niben101Scf09704g02001.1 27 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDAAAREFRGA 77 6********.**********8...557*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.41E-20 | 27 | 84 | No hit | No description |
PROSITE profile | PS51032 | 24.092 | 27 | 84 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-14 | 27 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-22 | 27 | 85 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.7E-39 | 27 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-32 | 27 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MAPKQLGGAV AVTAAVGEVN GISKEVHYRG VRKRPWGRYA AEIRDPGKKS RVWLGTFDTA 60 EEAAKAYDAA AREFRGAKAK TNFPPEEEEN LKIAQNNLGE EENLKIAQNN LGVKMITNVN 120 DNNNRSPSQS STVESSSRDG LSPAVMVDSS PLDLSLGVKF PFQNNQFRTS PIPGGFSGCG 180 FTGATPAMNH HLYYLEALAR AGVINLEKQQ QRQTVDFLGG NGGHGGSSGG SGSGTQSESD 240 SSSVIEFMRN DVKPPTRTSL NLDLNFPPPE NA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-22 | 27 | 84 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001311661.1 | 1e-137 | ethylene-responsive transcription factor 9-like | ||||
Refseq | XP_009760120.1 | 1e-137 | PREDICTED: ethylene-responsive transcription factor 9-like | ||||
Refseq | XP_016435613.1 | 1e-137 | PREDICTED: ethylene-responsive transcription factor 9-like isoform X1 | ||||
TrEMBL | A0A1U7VE74 | 1e-135 | A0A1U7VE74_NICSY; ethylene-responsive transcription factor 9-like | ||||
TrEMBL | R4WAJ9 | 1e-135 | R4WAJ9_TOBAC; Ethylene response factor #193 | ||||
STRING | XP_009760120.1 | 1e-136 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 3e-26 | erf domain protein 9 |