PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09698g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 277aa    MW: 31102.5 Da    PI: 8.4626
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09698g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00064215237223
                               EETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                               +Cp C+ +Fs+   L  H ++ H
  Niben101Scf09698g00005.1 215 QCPQCHLRFSTVKALIDHVQKiH 237
                               7******************9988 PP
2zf-C2H215.45.2e-05249271223
                               EETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                               +Cp C+k F+++  L+ H  + H
  Niben101Scf09698g00005.1 249 VCPRCSKGFRDPVALVEHVEReH 271
                               7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.18E-11459No hitNo description
PROSITE profilePS510398.0451055IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.5E-101153IPR000058Zinc finger, AN1-type
PfamPF014281.9E-121351IPR000058Zinc finger, AN1-type
SMARTSM001540.00341352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.105.4E-1191148IPR000058Zinc finger, AN1-type
SuperFamilySSF1183109.55E-1093148No hitNo description
PROSITE profilePS510397.99398145IPR000058Zinc finger, AN1-type
PfamPF014283.2E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.0044101142IPR000058Zinc finger, AN1-type
SMARTSM003550.015214237IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280216237IPR007087Zinc finger, C2H2
SMARTSM003557.1248271IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.016248276IPR007087Zinc finger, C2H2
PROSITE patternPS000280250271IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGTPAFPNLG KHCSVEDCRL IDFLPFTCDC CHKVFCLEHR SYNRHDCPTA NKNNVTVVIC  60
PLCAKGVRLI PDEDPNITWG SHVNTECDPS NYEKATKKKK CPVPRCRELL TFSNTIKCRD  120
CTIDHCLKHR FGPDHNCPGP KKPEAAFPFM NFLNGSKDEP KKAQSTSSSR WTTSLFKVVS  180
SVKEKLSNEF SQTQQTVQSS RATSHSTNTS SQVEQCPQCH LRFSTVKALI DHVQKIHEKN  240
GVMNLAVDVC PRCSKGFRDP VALVEHVERE HKGTSKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230516.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
SwissprotQ0D5B91e-115SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A314KJ220.0A0A314KJ22_NICAT; Zinc finger an1 and c2h2 domain-containing stress-associated protein 16
STRINGXP_009610975.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53112237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-117C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]