PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf09582g01011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 396aa    MW: 44489.2 Da    PI: 8.0168
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf09582g01011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000215979323
                              ETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                              C+ C+k Fs+   L  H+r H
  Niben101Scf09582g01011.1 59 CHVCSKGFSSGKALGGHMRIH 79
                              *******************99 PP
2zf-C2H214.30.00012122141221
                               EETTTTEEESSHHHHHHHHH CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                               +C++Cgk F++  +L  H+r
  Niben101Scf09582g01011.1 122 TCSICGKNFPSMKSLFGHMR 141
                               6******************8 PP
3zf-C2H212.30.0005291313123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ykC+ C ksF + + L  H ++H
  Niben101Scf09582g01011.1 291 YKCNTCEKSFATYHALGGHRSSH 313
                               9***************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.3E-85779IPR007087Zinc finger, C2H2
PROSITE profilePS501579.4525784IPR007087Zinc finger, C2H2
SMARTSM003550.235779IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.64E-55881No hitNo description
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM003550.018121143IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.88E-10121143No hitNo description
PROSITE profilePS501579.598121143IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.3E-4122143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.2E-8123145IPR007087Zinc finger, C2H2
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SuperFamilySSF576672.88E-10286313No hitNo description
PfamPF139121.2E-7291314IPR007087Zinc finger, C2H2
SMARTSM003550.096291313IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.637291318IPR007087Zinc finger, C2H2
PROSITE patternPS000280293313IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MVDYQDHRVG NETQLWIKLK ISEKEMLKDQ KQVSAEDHEY DEVNEEEDQI PKSNFRRICH  60
VCSKGFSSGK ALGGHMRIHV QAAKKLISVK KGKRLVHKKR ILDLHGQLVD FDNYNNQLPP  120
PTCSICGKNF PSMKSLFGHM RCHPERAWRG IQPPVNKNAT YLSSSDEKTA SASASGDDLS  180
KSVPSWSVTA KRGRKPIADD KEQLNDAVHH LMLLANGNSL ESDLTGDLCY YNKHEIPDEL  240
EITNSINSVT SKTEAHEELA CHVNEKRRKK LKFRFLGDDI SPGIVTPPEK YKCNTCEKSF  300
ATYHALGGHR SSHNKFRMVI QNSNVGTMAS SMIDPVNEPA ASSSKNGNKN FTLIGPSSSQ  360
LTLPGEVSGG RILHFDLNEL PPHEDTVEYF QFFQFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267273RKKLKFR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264895.10.0PREDICTED: ras-responsive element-binding protein 1
TrEMBLA0A314L4K40.0A0A314L4K4_NICAT; Zinc finger protein zat3
STRINGXP_009797499.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.14e-23C2H2 family protein