PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf09555g02004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 209aa MW: 23306.4 Da PI: 7.5629 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 216 | 1.2e-66 | 13 | 173 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnv 86 d+ seq+Cyv+Cn C+t+l+vsvP tslfk+vtvrCGhC++ll l +a++h+++++ + ++ l+ ++++ Niben101Scf09555g02004.1 13 DHLPPSEQLCYVHCNICDTVLVVSVPCTSLFKTVTVRCGHCSNLLP-----GLLLPSANHHFGHTYFSPSHNLLEEITNATPNLL 92 577899***************************************8.....4455566777888887776555554444444444 PP YABBY 87 ekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++ +st+ ++ +++pr+p ++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+i fgl Niben101Scf09555g02004.1 93 MNQS-NSTDFVLP--TRPGFDDLPRPPVINRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPQIQFGL 173 4333.33333332..3567889***999******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 8.3E-64 | 17 | 173 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.01E-8 | 117 | 167 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.8E-5 | 121 | 168 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence Send to blast |
MSSSTPNSTL SLDHLPPSEQ LCYVHCNICD TVLVVSVPCT SLFKTVTVRC GHCSNLLPGL 60 LLPSANHHFG HTYFSPSHNL LEEITNATPN LLMNQSNSTD FVLPTRPGFD DLPRPPVINR 120 PPEKRQRVPS AYNRFIKEEI QRIKAGNPDI SHREAFSAAA KNWAHFPQIQ FGLMPDQTVK 180 RANVRQQDGE DILMKDGLFT STNVSVSPY |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Seems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009781194.1 | 1e-150 | PREDICTED: protein YABBY 4-like | ||||
Refseq | XP_016477431.1 | 1e-150 | PREDICTED: protein YABBY 4-like | ||||
Swissprot | A2X7Q3 | 1e-73 | YAB4_ORYSI; Protein YABBY 4 | ||||
Swissprot | Q6H668 | 1e-73 | YAB4_ORYSJ; Protein YABBY 4 | ||||
TrEMBL | A0A1S4AL86 | 1e-149 | A0A1S4AL86_TOBAC; protein YABBY 4-like | ||||
TrEMBL | A0A1U7X2T9 | 1e-149 | A0A1U7X2T9_NICSY; protein YABBY 4-like | ||||
STRING | XP_009781194.1 | 1e-150 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45190.1 | 2e-75 | YABBY family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|